| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_47208 |
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| Symbol | INT1 |
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| ID | 4839327 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009045 |
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| Strand | - |
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| Start bp | 1003437 |
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| End bp | 1008359 |
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| Gene Length | 4923 bp |
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| Protein Length | 1640 aa |
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| Translation table | 12 |
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| GC content | 42% |
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| IMG OID | 640390642 |
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| Product | Integrin alpha chain-like protein (Alpha-INT1) |
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| Protein accession | XP_001385204 |
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| Protein GI | 150865828 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.194852 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CTTCTAGCAT CTGTAGACCT ACTCCTTAAA GAAATGAACG TCGATCCCGA TTCGATTCCC
ATTTCTGACG ATTACATTCC AGCACAAGAG TCATTTTCCG CGGTAGATTC ACCCACCAAA
CCACTTAACT TCCCTCGTTC GCTGCTGAAA CCATTAGGAA TGACCAGAGA GAAGGAGTTC
AACTCCAGCT CCGATACGTG TGCCAGCGAG AGCGATGTCC AGATTTCAAA TGTCGAAGAA
ATCGTCGCTC AAGTTGAGCC TGAGCCCACA GCCAAACCAA GCGATAACTC TTTCATGAGA
AATTTCGACT TGGACGACTC AGAAGATGCC GCAAACACAA TAGCTCACCC CAGCCACGAA
GCTGACGAGT TTTCATTTGC TACTCCCATG ACTTCAACCA TAGATTTGAA TAATCCTCAT
GCTATAAATC AGACAGTACC GAACTCTTCT ACCTATATCA ACACTTCACC TTCTAGATCA
ATAATGAAGA AAACACCTGC AAATTCGCCT AGGAAATCAG TTGTCTTCTC AAACTCCAAC
CCGGAAATAC ATCACTATCC TGAAGGTCTA GAAAGTACTG AAAGCGTGTC TTCCTCCAAC
GAAGAAGCTC ATAGTAAATC TGTAATTGTG ACGTCTATTC CTCACGAATG GAGCGAGTTG
AATAACAACA GCAACGGAAA ATCGATTTCT TCAGACGAGG AAGATGGATC AATAGCTCCA
GCTCCTCCTC CTCATAGTTC CAAGTCTTTT GAAGTGTTGT TAAAGAATAA TGCAGCAAAC
AACGAAGATG AAGCTATCGA TTCCCAAACT TTGAAGGACT ACAAGTTGAA ACACGACGGA
TACAGCAACC TCTCCTTAAA CGAGAAGTTG GACCTTTTCC TCTCTGAGAA GAACAACGAC
CCATTCAATG GCTCAAAACC ATATAACGAC CTTGATGAAC ATTTGAACAA CCTCCACAAC
GCCGCTCAGT ACAAAGCAGC TTCCAATATC CACGACTTAT CCGAGTCTAT CCAGATTCCT
AAACTTAACG ACTACGACAA TCCTTTGGAC TCCTTAGTCA AATCTTCAGA TGTTCAATTG
AGATCATCTG GTTCTTCCCA ATCCTCATTA CCTTCGTTGA GAGACTACAA CAGGACATTA
GATTCTATCA ACAACCAAGT AGGTGGCAAG AGTTTGGAAG TCAATGATGG TATCAAGGGT
CTTTCAGACG ATTTGGTAGA GTCTTTGATT CCGGAAAATG AAGACAGAAA AGTAGAGGCC
GAAAATGATG CATTGACAAT GAAACTGACG TCTACTTCAA GCAATCGAGA GATCAACCAA
AGGCAAGAAG AACCTTCTTT TGATAGCTCT TATAATAATA ACACTGAGAA GTCGATCATG
AACTTGTTGA TCAGCGCTTC TTCAGACCAT TTGTCAAAGG CAGTGGAAGA GTCTAACCAA
GTCGGCAATC AAGAAACTAT TGGAAAAGAG GTTGTTTCCA ATGGGGGTCC AAAGACTGTT
TCAGTTGAGG ATGTGTCTGT CAAACAAGAA AACCAAGCAA TTCCAAAGGA AATTAGCGTC
AAGAAAGAAC AAGATGACGT ACAAGATTTG GTCTCAATCA AAAGTGAAAA CAAGGACTTT
GTCAAGAAAG AAGGCGATGA ATTTACTAAC GAGCTATCTG ATTCAAAGTT GGAATCTGTC
TCTGAAATTT TAAGAGCTTC ACCTGTTCGA TTGGTGAAAA CCGAATCTCC AGTCCAAGAT
GAAGACAATA TTGTTGCCAA ACAAGAAATT TCAGCTGTTG AGGAACAGAA GAAGAACCCT
GACAAAGTTG AAGATGAATC ATTCTTGCCA GAAACAGGAA ATGAATCCAA GATGTCTTTA
CGTTTCAATT ACGACAGTGA TTGGAAATTG GAAGACAGTC ATGATGGCGA CAGAGAGGAT
AATGAAGACT ATACCAATAA CGACTTGACA GCTCCAAGCA TAGCAGTCGG AAAGAAGTCT
ATTGATTTTG AACGTCTCAT GACTGAAAAG AGACTTTCTG TGAATTTATC ACCCAATGAA
TCAGACAATG AAAACTTTAT CGATGCTTCC GAAGAATTAC AGATGAGAAC TTTGGCACCT
CCAAGAGAAG AAACGAAGAA ACCAGAAGAA GCGAAAGAAG TCGAAGAAAC AAAACCAGAA
GAAAACAGTG ATGAAAATGA TGACAAAGAC AATGTTTTGG CGAATTCTTC CAATATCGCT
CCACCAGGCG AAATAACACT CCCAGTTGTA GAAACCAACA ATTACTCTTC TTTTGACGAA
ATCACCAAGA GAATGGACGA GGATTCGTTC GAAGAGCTGC TTTCCGCTGA ACATGAAGCT
GATCCTAAAC CCAACGACTT CATATCTATC TGGCATTCCC AACTGATGCA AAAAAGAGAG
CATAAATCGC CTGACTATCT GTCGACTTTA AACACAGAGA CGTTGGTTCA AAGGGTTCCA
CAAGCTGACA CTCTTGAAAG AGGCAAGATT CCAGCTTCAT TACAACCCAA GAAGTTTAAG
GAAGTCAATG TGATGTCCAG AAGGGTGGTT AGTCCAGACA TGGAAGATCT TCACATTTCT
GGCTTTTTGC CAGAATTATC ACAAGATTCT GGTTTTGAAG AACATTTCAG ATTTTTGAAC
AACACTGGTA ACACTTCTCG TCATGCTAGT AAGAACTTTA CACCTTTGAG TACTGAGAAT
GTTTTGAATA ACATTGATTC AGATCCAAGG GTGTTGGAAC CTCCAAAACC TGTGGTCTCG
ATTGACCGTA GAGGAATTAC CACTTCAAAC CACATCAATT TGGTTCCACA GAAGGTTAAA
CCAGTTAAGG CAACTAAAGC AAAATCACAA TTCAAAGTTC CATCTTTTGA GATAAAGAGA
TCGTCTTCAG TTCTTTCTCC AAGAGATACA TACAACGATA TCTTTGACGA TGTGATAAAA
CAACCTCCGA CCATTAAGGC TAATGGGATG AAAACGTTAC CAAGTATGGA CAGAGACGAT
GTGAAGAAAA TATTAAGCAC CAAGAGAGTC ATTACTCAGG AAGAGTATAC CACGGTTAAG
TATGTAGGTA GAAATCCCCA GAAGAACTCT ATTGTCAATG AGCCGGATGC GAAGTACGAT
GAGTTACAAC AACAAGCATC TATCTGCAAT GTTACAGCAG ACTCTAGTCC TATGCAAAAG
ACCAATTCCG AAAGAGACAG CATCTTGCCC CACTTGGCTG ACGAGTTGAT GAAGGCTCCA
ACGGCATTAT TGTCAAGAGA CCAATTCTTC AAAGACAGTG GAGCTAGTGA TTTCGAGAAT
AAGGCTAAGA GAATTTCAAT TGAATCTTCT CGTGCTGGCT CAGTTGTCCA CCACTCTCCT
CCTGATGAAT TTAAATTATT TGATCATGAT TTTGAGATCA TTCATACTCC ACAGAGTACC
ACCATGGTTG TTCCCAATCT TCCTGATTCT TCTGTGTTGG AGCCGATTCC AATGTCTCCC
GAGAAGTATC AAGAGCCAGT TTCTCCAACT AAGAAACATC CGCCTATCAA GATTGGTTCT
CCAGTAAAGT TGCTTAGAGA TGGACAGTCT GTGACTGGAA TTGAAGTTGA GTCAATCAAA
AAGACTCATA GCTCACGTCC TTCGTTCAAC GGCGACGAGC TTTTGAACGG CAAATTGAGA
GATTCTCTTC CAAATGATAA TCTCAAACTG TTTGGTGCGG TAGAACAAGA ACTTAATGCT
GTTTCAACTT CTGATCCTTC GGTATACGCC AATGGCACGA CAGACGTATC AACTATCCTC
CGTCTTAACC CTGGACTTGA GTTTGACACC CAGGTAGGAT CCAGCAAGGA TATGGAGCAT
GGTCCTGTAC CATTACAGGA AAGAGGTAGG TTATTTTTGA GAGTTGTAGG TTTCAAAAAT
ATCGAATTGC CTGACCTCAA AAACCATGAT GCCAAGTTCT CGTTGACGCT AGATAATGGT
GTCCATTGCA TCAGAACTCC TAGCTACGAC TTGGATAAGC GCAACATCTT GATTGGCAAG
GAGTTCGAAT TGACCGTAGG CGATTCTTTG GAGTTCATCT TGACCATGAA AGCTACTTAT
GAGAAGCCAA GAGGCAAGAT AATGGAAGTC AAGGAAACTA AGGTGGTCAA GCCCAAGAAT
AGATTGAGTA GAATGTTTGG TCAGAAGGAA ATCATCACCA CGACAAAGTT TGTAACAGTT
GACGCGAAGG ATTCGTGGCA GAATAAATTT GCCCAAGACG GATCTTTTGC CAGATGCTAT
GTTGACTTGG ATCAGTACGA AGACAAGATT ACTGGTAGAG CTCAAAGTTT TGACATCACT
TGTTTCAATG AATGGGAAAC TACTAGCGAT GGTGGCAAGG AACCTGTCAG ATGCCAACCA
TATAGAATTG GACAACTTGA GGTCAAGATG TTGTTCATTC CACGCGCTGA TGCTCACGAA
GTCTTGCCTA CCAGTATCAG ATCAGCATAT CAGAGCATCA ACGAGTTGAA GAAGGAACTT
GGTTTCAAGA AGGAAGGGTA CATGCACCAG GAAGGTGGAG ACTGTGAAGT CTGGAAAAAG
AGGTTTTTCA AGTTAGATGG AACGTCGTTG ATCGCGCACA GCGAGTTCTC GCTCAAGACC
AGAGCCAAAA TCAACTTGGC TAAAGTTGTA GAAGTGATTT ATGTGGATAA AGAGAACATC
AACAGATCCA ATGGCAACTA CCGAAACTTC AGTGATGTTT TGTTAGTAGA GCATGCGTTT
AAGATCAGAT TCGCTAATGG CGAGTTGATC GACTTTGGTG CTCCCAACAG GGAAGAGAAG
CTTGAATGGA TTTCACTTTT GGAAAAGATC ATCTACAGAA ACAAATTCAG AAGACAGCAA
TGGGTGAAGT TGATGGTCGC TGAGAATAGT CAGCAATCCC GTCCCGTGTC GCTTGTTCGT
TAA
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| Protein sequence | LLASVDLLLK EMNVDPDSIP ISDDYIPAQE SFSAVDSPTK PLNFPRSSSK PLGMTREKEF
NSSSDTCASE SDVQISNVEE IVAQVEPEPT AKPSDNSFMR NFDLDDSEDA ANTIAHPSHE
ADEFSFATPM TSTIDLNNPH AINQTVPNSS TYINTSPSRS IMKKTPANSP RKSVVFSNSN
PEIHHYPEGL ESTESVSSSN EEAHSKSVIV TSIPHEWSEL NNNSNGKSIS SDEEDGSIAP
APPPHSSKSF EVLLKNNAAN NEDEAIDSQT LKDYKLKHDG YSNLSLNEKL DLFLSEKNND
PFNGSKPYND LDEHLNNLHN AAQYKAASNI HDLSESIQIP KLNDYDNPLD SLVKSSDVQL
RSSGSSQSSL PSLRDYNRTL DSINNQVGGK SLEVNDGIKG LSDDLVESLI PENEDRKVEA
ENDALTMKST STSSNREINQ RQEEPSFDSS YNNNTEKSIM NLLISASSDH LSKAVEESNQ
VGNQETIGKE VVSNGGPKTV SVEDVSVKQE NQAIPKEISV KKEQDDVQDL VSIKSENKDF
VKKEGDEFTN ELSDSKLESV SEILRASPVR LVKTESPVQD EDNIVAKQEI SAVEEQKKNP
DKVEDESFLP ETGNESKMSL RFNYDSDWKL EDSHDGDRED NEDYTNNDLT APSIAVGKKS
IDFERLMTEK RLSVNLSPNE SDNENFIDAS EELQMRTLAP PREETKKPEE AKEVEETKPE
ENSDENDDKD NVLANSSNIA PPGEITLPVV ETNNYSSFDE ITKRMDEDSF EESLSAEHEA
DPKPNDFISI WHSQSMQKRE HKSPDYSSTL NTETLVQRVP QADTLERGKI PASLQPKKFK
EVNVMSRRVV SPDMEDLHIS GFLPELSQDS GFEEHFRFLN NTGNTSRHAS KNFTPLSTEN
VLNNIDSDPR VLEPPKPVVS IDRRGITTSN HINLVPQKVK PVKATKAKSQ FKVPSFEIKR
SSSVLSPRDT YNDIFDDVIK QPPTIKANGM KTLPSMDRDD VKKILSTKRV ITQEEYTTVK
YVGRNPQKNS IVNEPDAKYD ELQQQASICN VTADSSPMQK TNSERDSILP HLADELMKAP
TALLSRDQFF KDSGASDFEN KAKRISIESS RAGSVVHHSP PDEFKLFDHD FEIIHTPQST
TMVVPNLPDS SVLEPIPMSP EKYQEPVSPT KKHPPIKIGS PVKLLRDGQS VTGIEVESIK
KTHSSRPSFN GDELLNGKLR DSLPNDNLKS FGAVEQELNA VSTSDPSVYA NGTTDVSTIL
RLNPGLEFDT QVGSSKDMEH GPVPLQERGR LFLRVVGFKN IELPDLKNHD AKFSLTLDNG
VHCIRTPSYD LDKRNILIGK EFELTVGDSL EFILTMKATY EKPRGKIMEV KETKVVKPKN
RLSRMFGQKE IITTTKFVTV DAKDSWQNKF AQDGSFARCY VDLDQYEDKI TGRAQSFDIT
CFNEWETTSD GGKEPVRCQP YRIGQLEVKM LFIPRADAHE VLPTSIRSAY QSINELKKEL
GFKKEGYMHQ EGGDCEVWKK RFFKLDGTSL IAHSEFSLKT RAKINLAKVV EVIYVDKENI
NRSNGNYRNF SDVLLVEHAF KIRFANGELI DFGAPNREEK LEWISLLEKI IYRNKFRRQQ
WVKLMVAENS QQSRPVSLVR
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