| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_46672 |
|---|
| Symbol | ASC1 |
|---|
| ID | 4839261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | + |
|---|
| Start bp | 1605754 |
|---|
| End bp | 1606911 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640390576 |
|---|
| Product | WD repeat protein |
|---|
| Protein accession | XP_001385004 |
|---|
| Protein GI | 126136961 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2319] FOG: WD40 repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGACC AAGAAGTTTT AGTTTTGAGA GGTACCTTAG AAGGTCACAA CGGATGGGTT
ACTTCCCTTT CCACCACCCC AGCTCACCCA GACTTGTTGT TGTCTGGTTC CAGAGACAAG
ACTTTGATCA GATGGAAGTT GACTGGAGGT GAAGACAACC AATACGGTGT CCCACAAAAG
TCCTTCAAGG GTCACTCCCA CATTGTCCAA GACGTTACCA TCTCTGCTGA CGGTGCTTAC
GCCTTGTCTG CTTCTTGGGA TAAGACCTTG AGATTGTGGG ACTTGGAATC TGGTGAATGT
ACCCAAAGAT TCGTTGGCCA CACTGGTGAC GTTTTGTCCG TCTCCATCGC CAAGAACTTG
AGACAAATTG TCTCTGCTTC CAGAGACAAG ACCGTCAAGG TCTGGAACAC CATCGGTGAA
TGTATGGCCA CCTTGAACGG CCACTCCGAC TGGGTCTCTG CCGTCAGAAT CTCTCCATCC
GACAACTCTT CCACTGTTAT CTCTGCTTCT TGGGATAAGA CTGTTAAGGT ATGTTTTTTG
AAATATTTTG ATTTTTCTAG CTTTTCTGAT TGACTCTAGA TGATGTATTC TATATTTGCT
ACTTCAGACG GGCTCGCCAG CTTCGAATGA GACATTTTTA ATCACCAAGA TCTCTGATGT
TATCGCAGTC AATCGGATTT AAGGAAGCTA GTATCTCCAC TATCTTCGAT TTTGTTACTA
ACTCAATTCT AGTCCTGGGA CTTGTTGGAC TACTCTGTCA ACGCTGACTA CATTGGACAC
ACCGGTTACA TTTCCTGCAT CACCTTGTCC CCAGATGGAT CTTTGTGCTC CTCTGCTGGT
AAGGACGGTG TTATCATCTT GTGGGACTTG AACTCCAACA AGACTTTGTA CACCTTGAAC
GCCAACTCTG AAGTCCATGC TTTGGCTTTC TCTCCAAACA GATACTGGTT GGCTGCTGCC
ACCTCTTCTG GTATCAAGAT CTTCAAGTTG CAAGAAAGAG AATTGTTGGA TGAATTGAAG
CCAGAATTCG CTATTGGTGC CAAGGCCAAG GACCCAGAAG CCATCTCTTT GGCTTGGTCT
GCTGACGGTC AAAACTTGTT CGCCGGTTAC ACTGATAACG TTATCAGAGT CTGGCAAGTC
ATGACCCCAT CCGCTTAA
|
|---|
| Protein sequence | MADQEVLVLR GTLEGHNGWV TSLSTTPAHP DLLLSGSRDK TLIRWKLTGG EDNQYGVPQK
SFKGHSHIVQ DVTISADGAY ALSASWDKTL RLWDLESGEC TQRFVGHTGD VLSVSIAKNL
RQIVSASRDK TVKVWNTIGE CMATLNGHSD WVSAVRISPS DNSSTVISAS WDKTVKSWDL
LDYSVNADYI GHTGYISCIT LSPDGSLCSS AGKDGVIILW DLNSNKTLYT LNANSEVHAL
AFSPNRYWLA AATSSGIKIF KLQERELLDE LKPEFAIGAK AKDPEAISLA WSADGQNLFA
GYTDNVIRVW QVMTPSA
|
|---|
| |