| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_46345 |
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| Symbol | HPD1 |
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| ID | 4839301 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009045 |
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| Strand | + |
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| Start bp | 1188147 |
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| End bp | 1189739 |
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| Gene Length | 1593 bp |
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| Protein Length | 530 aa |
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| Translation table | 12 |
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| GC content | 38% |
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| IMG OID | 640390616 |
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| Product | 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase) |
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| Protein accession | XP_001384908 |
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| Protein GI | 150865616 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
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| TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.693171 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.28283 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CTACTTAAAG AACTTCCATT TTTGCCAACT TCTCTGGACC CCATAACTGA ACCCGATATT
GATGAATTAC TTCTGGATGG TCATGTGAAT TCTAAATATC CAACTGATGG GTTTATCAAG
TTTTTCTCGC TTAAGATCTG CAGTTCCAAC GCAAAACAGA TGTCCAAATA TCTACAACTT
GCAATGGATT TCAAGGAGAT CGCCTACAAA GGTTTAGAGA ATGATTCTCG TTTGGTGGGA
GCCCACGTCA TTAGAAACGG GGATGTCACT CTTGAAATTG TCAATACTTT GGAAACTGTG
GAAGATGACA ATGTTTTAAA ATTCCCCTAT TTTGAAAAGG ACTTGAAGCA ATTTCCCCAG
CTTAATGAAC TGAAATATTT GAGAGATTTC AAAATCACCA CCAACGACCT AGTATTTGAT
TTTGTCAATA GCAGAATTGA AAGTTTTTCT GTTAGTCCAA ATGCTCATTA CTTCAGAAGA
AAGCTTTACA ATAAAATTGT CTCTTCTCGT GCTTTTAGGA ATAATATGTT TGACTACAAC
AACCTTATCC TCAATGTCAT CAACAATTCG GAGGTAATTT ACAATGACAT AATGGAATGT
ACATTGATTC AGAAGTTCCT TAAAACTCAT GGTGAAGGAG TCATGGATAT TAGTTTTCTT
GTTGAAGATG TCATAACCAT TTTCGATAAG GCAGTTGCCG CTGGAGCTGG TATTATTCGG
TTGCCAAAGA TCATTAGCGA TTGTAACGGT TCCGTTAGGT TGGGAACAAT CAGTATTCCC
AAGACTGATA TTCAGCACAC CTTGATAGAG AATATCGATT ATACGGGACC ATTCTTACCT
AATTACTCTG AGTCAGTGAC CCAATACAAC TCCAAATACT ATGATCAGAT GCAAAATATT
CCAACAGTTA GTTTCCAATG CATCGATCAC TGTGTAGAGA ACTATTCTTG GAACCAAATG
ATGGCACAAG CAAAACTCTA TGCATCTCTA TTTGGATTTC ACAAGTATTG GTCTGCTGAT
GATCATGATA TAGCTACTGA CAACACTGCT CTCAGATCAA TCGTCATGGC ATCCGGAAAC
GGGAAGATAA AGATGCCTAT CAATGAGCCC GTGAAGTCAA AAATGAGAGG TCAAATTGAA
GAATTCCATG ATTTCAATGG CGGCCCAGGT GTTCAACATA TTGCATTGAG AACCAATGAT
ATAATTGATA CCGTGTGTGC CTTATTGGCT AGAGGAATTG AATTTAATAC TGCTTCGGAC
AAATATTACA CGAATTTGGA ACGCCTTCTT AGAGAAGATG ACGTTGCATT ATTTGAGGAT
TTTGATACTC TCAGAAAGTT GAATATCTTG GTTGATTATG ACATTTCTAC CAGAAATAAA
AAGACAGGGA TTTGTAACTA CCTACTACAG ATCTTTACAA AACCATTACA CGATCGGCCA
ACGCTTTTCA TTGAAATTAT TCAGAGACAT CATCACAATG GATTTGGAAA GGGAACTTTT
AAGGGTCTTT TCGAAACTAT CGAAGAGCAA CAGCGAATCA GAGGAACTCT TGTACAAGTA
GACGAAGATG ATGATTCGCA ACAAAGTACA TAG
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| Protein sequence | LLKELPFLPT SSDPITEPDI DELLSDGHVN SKYPTDGFIK FFSLKICSSN AKQMSKYLQL
AMDFKEIAYK GLENDSRLVG AHVIRNGDVT LEIVNTLETV EDDNVLKFPY FEKDLKQFPQ
LNESKYLRDF KITTNDLVFD FVNSRIESFS VSPNAHYFRR KLYNKIVSSR AFRNNMFDYN
NLILNVINNS EVIYNDIMEC TLIQKFLKTH GEGVMDISFL VEDVITIFDK AVAAGAGIIR
LPKIISDCNG SVRLGTISIP KTDIQHTLIE NIDYTGPFLP NYSESVTQYN SKYYDQMQNI
PTVSFQCIDH CVENYSWNQM MAQAKLYASL FGFHKYWSAD DHDIATDNTA LRSIVMASGN
GKIKMPINEP VKSKMRGQIE EFHDFNGGPG VQHIALRTND IIDTVCALLA RGIEFNTASD
KYYTNLERLL REDDVALFED FDTLRKLNIL VDYDISTRNK KTGICNYLLQ IFTKPLHDRP
TLFIEIIQRH HHNGFGKGTF KGLFETIEEQ QRIRGTLVQV DEDDDSQQST
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