Gene PICST_46211 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_46211 
Symbol 
ID4839445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009045 
Strand
Start bp1362608 
End bp1363162 
Gene Length555 bp 
Protein Length184 aa 
Translation table12 
GC content45% 
IMG OID640390760 
Productpredicted protein 
Protein accessionXP_001384949 
Protein GI150865640 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.223556 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000159412 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTCTGAAA TCGCAATTGC TAGTAGTAAT AGCTTCGATC TGGCCAAGTA CGTGCTGGAA 
TCGGCTTCTG TCACCAAGGA GCCTGTCCTC TTCCACATTT TGCATATCAT AAACATCTCC
AAATCACGTC TTAGCCAGAG GGACGACTGG CTCGAGTACA GCGATCCCAA TAGCGCGTCT
GTAGACAGAT TGAACAAGCT GAAGAAAATG GTGCGAGAGG TTAATATCGA CGACGATGGC
CCTATAGTGA GTGCATTTGA CGTGTACAAG TTGCTACTAC AAGATTCACA CAAGAACGTA
TGCTATGCAT TCGAAAAAGA ACCGCTAAGA TTCTTGCGAG ATCAACGGCA GTCGACAGGC
ACACCACTTC CAATCCGTCT TGGGGGAAAA TTACTTGTGA AAAAAGATAC GCCCGTCTGG
AACGGGGTTC TTTTTCTTGA GAATAGGCAA TGTACGTACC TAGGAGTGGA TGCAAACGAT
CCGTTGAATG CTCAGCTCAA CACTGGATTG GTAGAAAAGT ATATAGCCAT TTTAGACCAA
GAGCTTAAGA GTTAA
 
Protein sequence
MSEIAIASSN SFDSAKYVSE SASVTKEPVL FHILHIINIS KSRLSQRDDW LEYSDPNSAS 
VDRLNKSKKM VREVNIDDDG PIVSAFDVYK LLLQDSHKNV CYAFEKEPLR FLRDQRQSTG
TPLPIRLGGK LLVKKDTPVW NGVLFLENRQ CTYLGVDAND PLNAQLNTGL VEKYIAILDQ
ELKS