| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_36305 |
|---|
| Symbol | |
|---|
| ID | 4839229 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | + |
|---|
| Start bp | 811507 |
|---|
| End bp | 813030 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640390544 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384820 |
|---|
| Protein GI | 126136593 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2141] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.412413 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.117145 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCTG CCTCAAAGAG AAAACCTATT ATCATCAATG CCTTCGACAT GGGCTGTTCG
GGCTTACAGG CTCCTGGCTT GTGGAAGCAT CCTAAGGATA AATCCAGAAA CTACAATACC
ATCGAGTACT GGACCTATTT AGCCAAATTG TTGGAGAAGG GTAAGTTCAA TGCCCTCTTC
ATTGCTGATG TCTTGGGAGG CTACGACGTT TACAATGGTC CACGTAATAT CAGAGCTGCT
GCTATTGCCG GAGCTCAATG GCCTGTCAAT GAACCAAGTG CTGTTGTTTC TGCCATGGCT
GCCGTAACCA AGAAATTGGC TTTTGGCGTC ACTTTCAGTA CCATCAGTGA AGCTCCATAC
CACTTCACGA GAAGATTGGC TACCTTGGAT CACTTGACAA AGGGTAGAGT TGGCTGGAAT
GTTGTTTCCT CATACTTGGA CAGCGCAGCC AGAAACTTGT TGAACGGAGA AGACTTGCCA
CCTCACGATG AAAGATACGA ACGTGCTGAA GAGTACATCA GGGTTGTTTA CGACTTGTTG
CTTTCTTCTT GGGCTGATGA TGCTGTTGAG CTCAAGGATG GTGTCTTTAC CAACCCTGAC
AAGATTAGAG AAATCAACTT CGAAGGGAAC TATTTCAAAG TTCCTGGTCC TAACATCACA
GAGCCAAGTC CCCAGAGATT GCCAGTTATC CTACAAGCTG GAACTTCGAA ACAGGGTAAA
GAGTTTGCTG CAAAGAACGC CGAAGTCGTT TTCATTACTA CTTTCAGCCC TGAAGCCTTA
GGAAAGCAGA TCCAGGACAT CAAGAGACTC GCTCTCGAAA ACTACGGAAG ACCAGAAGGG
TCTATCAAGT TCTTGCAATT GATCACTACT GTTATTGCTG ATACCGAAGA AGAAGCTGCT
GAAAAATACA AGGACTTGAA GAGCTATGGT GATATTCAAG GTGCCCAGGC ATTGTTTAGT
GGCTGGACTG GTATTGACAT TGGTCAATTT GCCGAAGGTG AAGAGTTGAG AGATGTTGGT
TCCAACGCCG TCAGAGGCTT TGTAGATCTC TGGACCAAGA CGTCTCCTGG TGAACCAGAG
GATGTCAAAA AGACTAGAGA ATACGTAGCT AGACAAATTA CTGTAGGAGG ATTAGGTCCG
GTATTCTTTG GAACAGCCAA GACGGTAGCA GACGAAATCG AAAGATGGGT GAATGTCAGT
GGAGTTGACG GGTTCAACAT CACTTACGCT GTTACCCCAG GTTCTTTCGA AGATGTGGTA
GAATACTTGA TTCCAGAATT GCAAGAGAGA GGCTTGGTAT GGGATGACTA CCCAGAAACA
GAATCCTTGA CTTTCAGAGA ACAATTGTTT GGTTCTGACC GTAAGGAACC AGAATACTTG
CTTGAGTCGC ATCCTGCTCA CGACTTGAGA TGGAGAGCTG GCGTTTCCAA AGAAGAGTTC
GAGAAGCAGG TAGCCGAAGT AAAGAAGAGA ATTGCCCAAG TAGACAAGGA GAACAAAGCG
AAGGCACAGA CTGCTCAGAA GTAA
|
|---|
| Protein sequence | MTAASKRKPI IINAFDMGCS GLQAPGLWKH PKDKSRNYNT IEYWTYLAKL LEKGKFNALF
IADVLGGYDV YNGPRNIRAA AIAGAQWPVN EPSAVVSAMA AVTKKLAFGV TFSTISEAPY
HFTRRLATLD HLTKGRVGWN VVSSYLDSAA RNLLNGEDLP PHDERYERAE EYIRVVYDLL
LSSWADDAVE LKDGVFTNPD KIREINFEGN YFKVPGPNIT EPSPQRLPVI LQAGTSKQGK
EFAAKNAEVV FITTFSPEAL GKQIQDIKRL ALENYGRPEG SIKFLQLITT VIADTEEEAA
EKYKDLKSYG DIQGAQALFS GWTGIDIGQF AEGEELRDVG SNAVRGFVDL WTKTSPGEPE
DVKKTREYVA RQITVGGLGP VFFGTAKTVA DEIERWVNVS GVDGFNITYA VTPGSFEDVV
EYLIPELQER GLVWDDYPET ESLTFREQLF GSDRKEPEYL LESHPAHDLR WRAGVSKEEF
EKQVAEVKKR IAQVDKENKA KAQTAQK
|
|---|
| |