| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_32283 |
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| Symbol | RRP46 |
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| ID | 4839070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009045 |
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| Strand | + |
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| Start bp | 1122894 |
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| End bp | 1123574 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 12 |
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| GC content | 44% |
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| IMG OID | 640390385 |
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| Product | Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein 46) |
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| Protein accession | XP_001384890 |
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| Protein GI | 126136733 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0689] RNase PH |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0605509 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACATCCG TGAATACTTC ACTTTTGCAA AAGTCGGATG GTTCTGCGGA ACTTCTTCTC
GGATCTACGA AGGTCATCGC TTCTGTCACT GGACCCATAG AGCCCAAGGC CAGACAAGAA
TTGCCTAACC AGGCCAGTTT AGAGATTCTC ATCAGGCCAG CAGTGGGGTT AGCGACTACA
AGAGAAAAAC TTCTCGAAGA CAAACTCAGA TCTTTACTCC AGAGTATCAT AGTCAGATTC
AAATATCCTA GACAGCTCAT TCAAGTAGTG GTTCAGTTTT TGATTTCCGA CTCCAAGAGA
ACAGAAACAG ATTTGGTCGA CTATACTAGT AATGACTTAA ATGCCGCTAT CAACTGCTGC
TACTATGCGT TGATAGATGC GGGCATAGCG TTGAAGGCTT CGTTTGTCTC GCTTTCCATA
GCTGTGAAGA ATGGAAATCT TACAGTGAAC CCAACTGTAT ACGAATTGGC CCAAAGTGAT
TCTCACCATG TAATTTGCTT CAACATCGAA AAAGGCAAGG CCAACAAAAT CCTCTTGCTT
GAAAGTCAGG GTGACATAAA GGAAGACGAG TTGTTTGCCA TGATTTCGAA GGCAGTAGAG
GAGGCGGAGA AGGTGCACCA TGAGCAGCAG AGAAAGTTTG TTAAGGAGAA GGTGGAGAAT
GATTATGTGT GGAAGCAGTG A
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| Protein sequence | MTSVNTSLLQ KSDGSAELLL GSTKVIASVT GPIEPKARQE LPNQASLEIL IRPAVGLATT
REKLLEDKLR SLLQSIIVRF KYPRQLIQVV VQFLISDSKR TETDLVDYTS NDLNAAINCC
YYALIDAGIA LKASFVSLSI AVKNGNLTVN PTVYELAQSD SHHVICFNIE KGKANKILLL
ESQGDIKEDE LFAMISKAVE EAEKVHHEQQ RKFVKEKVEN DYVWKQ
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