| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_32120 |
|---|
| Symbol | SCW11 |
|---|
| ID | 4839414 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | - |
|---|
| Start bp | 725973 |
|---|
| End bp | 727508 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640390729 |
|---|
| Product | family 17 glucosidase SCW11 precursor (Soluble cell wall protein 11) |
|---|
| Protein accession | XP_001385149 |
|---|
| Protein GI | 150865792 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG5309] Exo-beta-1,3-glucanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.506951 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0756506 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTCC ATCAACTTTT AACATTCCTT TTCTTATCTC AAGTTATTCT TGCCATTCCT
TTGCCATTAC TAGTTACAAG ATGGCACACA GCCCCTGCAG TTACAACTAC TCAAACTTAC
ACTACTGCTG TCACCACCGT ATACTTGCCT CCTGTTCAAA TCTTAATCTC CAACGGTGTC
ACCTTCACCA ACACTTTAAC TGCTGAACAA TGGCAAACTA CTCCATTAAC TACTACTTCT
ATCTACAGTG ATCCTGTTAC TCAAGAAACT GAAGCCCCAG CACCAGTTCC TACTACTTCT
GTACCAGTGG TAAAAGCTGT CGATCCTGCT AGTGTGTCAA CTCCATTAGC CATCCCAACA
ACTACTGCTA TTACTCCAAA CACTCTCTCC ACGACTGATA TTCCAACTCA GGTTCCTACT
ACTCAGCAAT CTATTGAAGA GCAATCTTCT CCAGTAGCAA CTACTCAGCA GACTACTCAG
CAGACTACTC AACAAACTAC TCAGCAAACT ACTCAGCAAA CTTCTACTCA GCAAACTACC
ACTCAGCAGA CTACCACTCA GCAGACTACT ACTCAGAAGA CTACTCAGCA AACTACCGAA
GATCAATCTT CACCAGAAGC AACTTCCGAA TTTGAGCTGA CCGCCCAAAC TAGTTCAACT
ATCCAAACAT CTTCTACTCT GCAATCCAAT TCTAACTCTG AAGAAACTCC CTACAATCCA
GGTTCTGATA TTTCGAACAT TCCTGCTCCA CAATATATTG TCTACTCACC TTACACTAAC
GATGGAGGAT GTAAGCTAGC TGATACCATC AACTCTGATT TGGAATTGAT CAACAGCAAG
GGAATTAAGA AAATTAGAGT TTACGGTACT GACTGTGCAA CTCTCTCTGC CGTTTTACCA
AAAGCAGCTG AATTGGGTTT CAAAGTCAAT CAAGGATTCT GGTTCTCTAA TGCAGGTGCC
GACTCGATTG ACGGATCTGT CAGTGATTTG ATTGACTACG CTAGTGAAAA CGGTTGGGGT
GTTTTTGATT TCATCACCAT TGGAAATGAA GCCATTAACG ACAATTACCT TACAGTCTCT
GAATTGATCT CAAAGATCAG CAGTGTTAAG TCCCAATTGC AGGCTGCCGG TTACAATGGT
AGAGTCACCA CATCTGAACC ACCAGTGTCT TTCATCAACA ATCCAAGCTT GTGTACTGCT
TCTGATATTG ACTTGGTAGG TATCAACCCT CATTCTTATT TCAATGGCGC TATTACTGCT
TCCCAGGCTG GAAGCTTTAT TATGGCTCAA AAGAAATTGG TTGAAGCCGC CTGTGGCTCT
AAGGAAGTTT TGATCACTGA AACTGGTTAC CCTTCTAAGG GTAGTGTCAA TGGTTTGAAT
GTTCCAAGTC CTGACAATCA GAAGATTGCC GTCCAATCCA TCATCGAAGA AACTGGTGGT
GATTGCACGA TCTTGACTAC ATTCGACGAT TTCTGGAAAC CTTCAGGATC TTATGGAATT
GAGCAATATT TCGGTTCTAT CGATTTATTC GCTTAG
|
|---|
| Protein sequence | MIFHQLLTFL FLSQVILAIP LPLLVTRWHT APAVTTTQTY TTAVTTVYLP PVQILISNGV
TFTNTLTAEQ WQTTPLTTTS IYSDPVTQET EAPAPVPTTS VPVVKAVDPA SVSTPLAIPT
TTAITPNTLS TTDIPTQQTT EDQSSPEATS EFESTAQTSS TIQTSSTSQS NSNSEETPYN
PGSDISNIPA PQYIVYSPYT NDGGCKLADT INSDLELINS KGIKKIRVYG TDCATLSAVL
PKAAELGFKV NQGFWFSNAG ADSIDGSVSD LIDYASENGW GVFDFITIGN EAINDNYLTV
SELISKISSV KSQLQAAGYN GRVTTSEPPV SFINNPSLCT ASDIDLVGIN PHSYFNGAIT
ASQAGSFIMA QKKLVEAACG SKEVLITETG YPSKGSVNGL NVPSPDNQKI AVQSIIEETG
GDCTILTTFD DFWKPSGSYG IEQYFGSIDL FA
|
|---|
| |