| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_32083 |
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| Symbol | VCP1 |
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| ID | 4839105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009045 |
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| Strand | + |
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| Start bp | 640696 |
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| End bp | 643194 |
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| Gene Length | 2499 bp |
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| Protein Length | 832 aa |
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| Translation table | 12 |
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| GC content | 40% |
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| IMG OID | 640390420 |
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| Product | AAA ATPase |
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| Protein accession | XP_001384792 |
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| Protein GI | 150865535 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0464] ATPases of the AAA+ class |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.190339 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAAGA AACGGCCTGT GACGAATAGC CTTGACGTGA AGATATACGA GTTAATTTGT
GAATTGCTCG ATGAGACTAC AGCTGAAAAT TTGAAGAGCT TACCTCAATC TGATGACAAC
ATCTCATACA TTGCACTCGC CAAAGATATT ACTATTTCCC AGGCACTTGA TTATGTTCAG
TCTAAGGACT ATAAACTAAA GAGGATAAAG AAGAATTTGT TGGAAAAGTC AATAATAGCG
TCTCTTCAAA CACTACGAAC TGAAGAGGAA GAGACTATGG GGACAATTGA TAGTTCAACA
AAGACAGATG ATAGTGATGC CGAACTTTAT GGTGAAGGTA GATTGATGGA AGTAAAAGAT
TCTAATTCAT TGAACAAGTC TGTTGTAACT GCTTGGAAAT TGAATAATTC AATTGCAAAA
AGTGAGTTAG CCAACGAAGT GCTTGATCCA AATGCAGAAG AGCTGGTAGA AGATGTTGCA
AAACAATCGA AAAAGAGAAC AAAAGATTCA TCCAAACAAG TTACTAAGAA ACACAGGAGC
AAAATAGATC ATACTCCTCC AAGTTTAACA TTGTCTTCCT TAGGTGGATT GGACAGTACG
ACTACTCAAC TAATGGAATT GATTGGGTTG CCTATCCTTC ATCCGGAGAT CTACACGTCT
ACTGGTGTAG AACCTCCTCG TGGTGTCTTG CTCTACGGTC CTCCTGGATG CGGTAAGACC
ACTATTGCCA ATGCACTTGC TGGTGAATTG CAGGTCCCAT TTATAAACAT TTCAGCTCCA
TCTATAGTGT CTGGGATGTC TGGCGAATCA GAAAAAAAAT TAAGGGAAAT ATTTGATGAA
GCTAAAACGT TGGCGCCTTG CATCATCTTT ATGGATGAAA TTGATGCAAT CACACCTAAA
AGAGATGGAG GTGCTCAGAG GGAAATGGAA AGGCGAATTG TTGCTCAATT ATTGACTTTG
ATGGATGAAT TATCGTTAGG CAAGACCGAA AAACCAGTGA TTGTAGTAGG AGCTACTAAT
CGACCCGATT CGCTTGATGC TGCCTTGAGA AGAGCCGGCA GATTTGATAG AGAAATATGT
CTCAATGTCC CTAACGAGGA CGAAAGACTC TCGATATTGA AAAAGATGAC CAGCAATATT
AAGTTAGAAA ATGGAGACTT CAATTTCCGA GAGTTAGCAA AAATGACTCC AGGATATGTA
GGAGCTGATT TGAAGAGTTT GGTGACTGCT GCTGGAATTT CCGCAATAAA GAGAATATTC
GAAAGTCTCA GTGAGCAGCA AGAGGAATTA CTAGTTGCAG ATTCCAATGC AAACAGTTTT
GATTCAATGG ATGTTGATAG TGCAACTTTC ATTCCTGACA ACCAGTCGCT CGTAAAATTT
GAAGGAAAGA CGGATACCGA AAAATTATCT ACGATTCAAA AGTTTTTAAT TAAGCATCCC
AACCCATTGA GCGACGAACA ATTAAACCCA TTAGCAATTT CTTATTCTGA TTTCTTGGAA
GCACTTCCAA CGGTACAACC AACAGCCAAG AGGGAAGGAT TTGCTACTGT ACCAGATGTG
ACATGGAAGA GTGTCGGAGC CTTACACAAG GTGAGAATGG AGCTACACAT GTGTGTGGTT
CAGCCTATTA AAAAACCAGA ACTTTACTTA AAAGTTGGTA TCACCGCCCC AGCCGGTGTC
TTGATGTGGG GACCGCCAGG TTGTGGGAAG ACATTATTAG CAAAAGCTGT CGCTAATGAA
TCTCGAGCTA ATTTCATATC TATCAAGGGT CCAGAATTAC TCAACAAGTA CGTAGGTGAA
TCCGAGAGAG CAATTAGACA AGTCTTCCTG AGAGCAAGAG CTTCCATTCC GTGTATTATA
TTTTTTGATG AATTGGATGC TTTAGTTCCA AGAAGGGATG CATCTTTATC TGAATCTAGT
TCACGAGTAG TGAACACATT ACTTACCGAA TTGGACGGGT TGAATGATCG AAAGGGTGTG
TTTGTAATTG GAGCCACTAA CAGACCAGAC ATGATAGATC CTGCCATGTT GCGTCCCGGC
AGATTGGACA AGACTTTGTA TATCGAGCTC CCTTCTGCTG AAGAAAGACT TGAAATATTG
AAAACTCTTA TTAATGCTAA CAAGACCCCC GTAAGTGTTG ACGTGGACTT GAATTCAATA
GCAAATGATA ACAGGTGCAG AAACTTCTCC GGTGCAGATT TGTCTTCTCT AGTAAGAGAA
GCTGGAGTCT TAGCTCTTAA AAAGAAATTC TTTCAAAATC AAAAAATCGA CGATTTGGAT
GCATCTGGCT ACTACGAGAA TGAAAATGTT GATGACCAAG TGGAAGTGAC TCAACAAGAC
TTTAATAGAG CCCTTTCCAA TGTTCATCCC AGTGTGAGCG ACAAAGATAG AATGAAATAC
GAAAAGTTAA ACAAGAGAAT GGGGTGGAGT GTTATCGAGG ATTCTGAAGT TATAGAGCCA
ATAGAGCCTA CAGCGAACAC TCCAAATGCA AGTGTATAA
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| Protein sequence | MSKKRPVTNS LDVKIYELIC ELLDETTAEN LKSLPQSDDN ISYIALAKDI TISQALDYVQ
SKDYKLKRIK KNLLEKSIIA SLQTLRTEEE ETMGTIDSST KTDDSDAELY GEGRLMEVKD
SNSLNKSVVT AWKLNNSIAK SELANEVLDP NAEESVEDVA KQSKKRTKDS SKQVTKKHRS
KIDHTPPSLT LSSLGGLDST TTQLMELIGL PILHPEIYTS TGVEPPRGVL LYGPPGCGKT
TIANALAGEL QVPFINISAP SIVSGMSGES EKKLREIFDE AKTLAPCIIF MDEIDAITPK
RDGGAQREME RRIVAQLLTL MDELSLGKTE KPVIVVGATN RPDSLDAALR RAGRFDREIC
LNVPNEDERL SILKKMTSNI KLENGDFNFR ELAKMTPGYV GADLKSLVTA AGISAIKRIF
ESLSEQQEEL LVADSNANSF DSMDVDSATF IPDNQSLVKF EGKTDTEKLS TIQKFLIKHP
NPLSDEQLNP LAISYSDFLE ALPTVQPTAK REGFATVPDV TWKSVGALHK VRMELHMCVV
QPIKKPELYL KVGITAPAGV LMWGPPGCGK TLLAKAVANE SRANFISIKG PELLNKYVGE
SERAIRQVFS RARASIPCII FFDELDALVP RRDASLSESS SRVVNTLLTE LDGLNDRKGV
FVIGATNRPD MIDPAMLRPG RLDKTLYIEL PSAEERLEIL KTLINANKTP VSVDVDLNSI
ANDNRCRNFS GADLSSLVRE AGVLALKKKF FQNQKIDDLD ASGYYENENV DDQVEVTQQD
FNRALSNVHP SVSDKDRMKY EKLNKRMGWS VIEDSEVIEP IEPTANTPNA SV
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