| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_31908 |
|---|
| Symbol | MSY1 |
|---|
| ID | 4839467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | + |
|---|
| Start bp | 188251 |
|---|
| End bp | 189909 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640390782 |
|---|
| Product | tyrosyl-tRNA synthetase |
|---|
| Protein accession | XP_001384692 |
|---|
| Protein GI | 150865466 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0162] Tyrosyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00234] tyrosyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.483177 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.847897 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAGGG GAAGAATCGG CGTATTTGTC CAGTGTCGTT CTTTGAGCAG ACTTAGGGCG
ACCGCAAGGC CCGTTTCTTT TGGCAAACTG TTGAGGTTCA ACTCTTCCAC TATCAAATCA
GATGTGAATA TTGAACAACT GAAAAATAGT GCTAGCCAGC CAGCTTCTTC AAATACAGAG
AAGATAGAGG CTCCTGTTGA AGAAGACACT CCTGATACCA TCACCATTGT GCCTGCTCTT
AAGGAATTGA CCGGCTCAGC AAATTACCAG CCCGATTTAG ATATGCCTCT TGTTGGCCAT
TTGCAATCAC GGTATCTTGT AGAATCGATA ACCGACGATG CTTTGTTCGA CTTGACTCTG
CCTGAAAGCA CCAAGAAGTT CAAATTGTAC TGTGGAGCCG ATCCAACTGC CGAATCGCTT
CATTTGGGTA ATCTCTTGCC ATTGATGGTT CTTCTTCATT TCAACTTGCG TGGCCACGAT
GTAGTAGGAC TTGTAGGAGG AGCTACTGGT GCTGTAGGAG ATCCCAGTGG CAGAACTACA
GAAAGATCCC AGATTGAAGA TAAAGAGAGA GAAGATAATG TATCCAAGAT CCAGAAACAA
TTGGTGACGT TTTTGGAGAA TGGTGTAGCC TATGCCAAAT CGCGTAACTA TCCTATAGCA
GGAGAAGGAA GGATTTTAAC GGCTAATAAC GCCAGCTGGT GGCTGTCGAT AGGCATGTTA
GAGTTCCTTG CCAAGTATGG CAGACATATC CGTGTATCTT CAATGCTTGC GCGTGATTCA
ATTCAGTCTA GATTGAAGGA CCAACATGGT TTAGGATTCA ACGAGTTCAC CTACCAGATC
TTGCAAGCCT ACGACTTTTG GCACATGTTC CGGGAAGATG GGGTCAACAT GCAGATAGGT
GGCAATGACC AGTGGGGTAA TATTACCGCT GGTATCGACT TGATCTCACG GTTACAGAGA
CATTTTGGAA AAGAAGGTGT AGAGCCACAA AGTGCCTATG GTATGACTGT GCCGTTGTTG
ACTTCTCCCA CGGGGGAAAA GTTTGGCAAA TCGGCTGGGA ATGCTGTTTT CATCGATGAA
AAGTACACCA CGCCGTACCA GATGTACCAA TACTTCATCA ACAGTCCAGA CGATATGGTT
GCAAAGTTGC TTAAAACGCT TACATTGTTG CCATTGAGTA TTATAGACGG TTATATCTTG
CCCAAACACG AATCCGATCC TGGTTTGAGA ATTGCCCAGC GTATCTTGGC TCGTGAAGTT
GTGGACTTGA TCCATGGTGA GGGTGTCGGT GAAGAGATGG CCTACATCAC CAGTTTCTTA
TTTCCTACAC CCGATCAGCC ATTCAACGAT ACTGTATCTG CAGATCGGTT GATCCAGAAT
TTTAGGAGAT CGGGCATTTT GGTGAACTTG AAGTTTTCGG AAATCGAGAA CATCGACGAC
TTACGTATGA GCAGCTTGTT AGCCCAGATC ACCAACAAGT CCCGTAGAGA AGTGAAGCAG
TTGATCAAGT CAGGAGGAAT CTACATGGGT TTGGAGAGAG ATCAGTTTGA GGATCCCGAA
GATGTAGTAT TGTTTGACCG TGATAACCAC TTGATCGACG GCAAGTTACT TCTTGTCAGA
GTGGGCAAGC AGAATTATTA TGTTGTTGAG TTCAGTTAA
|
|---|
| Protein sequence | MLRGRIGVFV QCRSLSRLRA TARPVSFGKS LRFNSSTIKS DVNIEQSKNS ASQPASSNTE
KIEAPVEEDT PDTITIVPAL KELTGSANYQ PDLDMPLVGH LQSRYLVESI TDDALFDLTS
PESTKKFKLY CGADPTAESL HLGNLLPLMV LLHFNLRGHD VVGLVGGATG AVGDPSGRTT
ERSQIEDKER EDNVSKIQKQ LVTFLENGVA YAKSRNYPIA GEGRILTANN ASWWSSIGML
EFLAKYGRHI RVSSMLARDS IQSRLKDQHG LGFNEFTYQI LQAYDFWHMF REDGVNMQIG
GNDQWGNITA GIDLISRLQR HFGKEGVEPQ SAYGMTVPLL TSPTGEKFGK SAGNAVFIDE
KYTTPYQMYQ YFINSPDDMV AKLLKTLTLL PLSIIDGYIL PKHESDPGLR IAQRILAREV
VDLIHGEGVG EEMAYITSFL FPTPDQPFND TVSADRLIQN FRRSGILVNL KFSEIENIDD
LRMSSLLAQI TNKSRREVKQ LIKSGGIYMG LERDQFEDPE DVVLFDRDNH LIDGKLLLVR
VGKQNYYVVE FS
|
|---|
| |