| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_25248 |
|---|
| Symbol | |
|---|
| ID | 4839439 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | + |
|---|
| Start bp | 1338016 |
|---|
| End bp | 1339722 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640390754 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384946 |
|---|
| Protein GI | 150865637 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00727478 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | AGACGATATA CATTGCCAGA CTCTGCCCAC GAAGTGATTC TCTTTTCTGG TCAGAATGTA
GATAACGAAG AGGCCATCGA AGATGAAAAC AGCCTTTCAC CAGCTTCGTC TGTAGCACTT
TCGGAAACAG AGACTCTAAA CTACGACAGA AAACAGCGAT TCGAACTTCA GGAAAGTTAC
GACGAAAATT TTACCTTGTA CTTGCCATAC TTGCTCCGTC AGATGAGACT AGAATCAATC
CGCCAGGCAC ATCAGGAACA GAACGAAAAC ATCACGGGCA GCTACAATAC AGCAGAAGAA
GTCAGGGATA CAGTAGCTAG CTACCATAAT AGACGGTTTG GTAGTTCTAG CCCTGCAGAA
CATAGCAACG GTGCTTTTAA TGGTAATTCC TCTGACAATA GACCTATTGC TCTTTTTAAT
TCTAGGGAAG ATACCAACTT TCAGAACCAT ACCACTCCTG TATTTGAAGC AGATGCACTC
GATGACGATC TCTCCACCGT TTTGGATGAA CCATATGCTA GTAATGATCA TCCTAGTAGA
AGACAGATCA TGGGTAAACA TACTTCTTTG TTCAATGTGA AACGGGAATA TGTAATTGTG
GGTGAATTGA TGAAAAGTTC CAATTACGTG TTTCCCAGCC GTGAATCTTT TGAACTTTTC
AAGCAGCTAA GGAACAACAG CAAGAAGATA CGGAAAGGAC TGGTTATCAC TTACGATTCA
GCTGGAACAA TCAGAAAGAT GTCGAATGTA ACAAAAGAGG ACATCAAAGA AGCCACATCC
TCGCATGAAG TTGTCGACGA AAGAAATCAC CTAGTGCCTC TAGAATACAA GCTCAAGGGT
TTAGGTATGC CCTTGTTCAG AACATTTGTG CCGTATTTGT CTAGTTTCAA GAAAAATTCT
CCTTTCATGG TATTTGCCAA GTATCGAGAG ATTCCCTTGA AACCCGTGTT GGATGCAAAT
GGTAAAGATA TCCTGATAGA CAAGGACACC GACCCGGACA ACTACGAGAC TTACCCATTC
TGCACGGTCA ATTCAAAATT CTTCCAAAAC GTTCGTAGAT TTATCTTCCA TTTCCACATG
AACGGAGAGA AGCCTGACTT CAAAGTGATA ATGTTCTGCA ACAACATGAA ACCGTATGCC
GACTTCAACT ACAAGGGGAC GAGATTTAGA GTAATTGGAC CTGCTACTAC TACCATATAC
TTGATGTCAT ACAACCCCAA CATGAGGCTT CTCGTCATAG ATGATGACCA GCCCTCACTC
TGCGATAATA TCATCAACAA AAGACCCGGT TTCGAGTTGC TGAGTCTCTT AAAAAAGAAG
AAGTTGCCCA ATAAGGCAAA TGGAACCACT CCAGATTCAG GAATTTCTGG ACCAGTTAAA
TTTGACGAGA ACAATCCAAA CACTTTCGTA AACCCATACC CTAACCCAAA GAATCCGCTC
ATTAAGGAAC TCTCCATGGC AGTTACTGTG AAAGGATACG TAAGCAATAA TCTTCCACCT
TTCGGAGCTT TCAAGGACTC CATGCTTTAC GACAACCAGC ATGGATTGCT TCCTAAGAAG
TACAATGAAT TGGCCAAAGT AGAGTTGTAC CAAGATAGTG TTTCCAGGCA AATCGAAGAC
ATGAACAGCA CTTTATCCAC AGATTTGGAT ACCCAGGTGT TATTCTGTGT GATGGCAGTT
CTTCGTGAAG TATCGGTAAG AAACTCT
|
|---|
| Protein sequence | RRYTLPDSAH EVILFSGQNV DNEEAIEDEN SLSPASSVAL SETETLNYDR KQRFELQESY
DENFTLYLPY LLPSYHNRRF ADALDDDLST VLDEPYASND HPSRRQIMGK HTSLFNVKRE
YVIVGELMKS SNYVFPSRES FELFKQLRNN SKKIRKGSVI TYDSAGTIRK MSNVTKEDIK
EATSSHEVVD ERNHLVPLEY KLKGLGMPLF RTFVPYLSSF KKNSPFMVFA KYREIPLKPV
LDANGKDISI DKDTDPDNYE TYPFCTVNSK FFQNVRRFIF HFHMNGEKPD FKVIMFCNNM
KPYADFNYKG TRFRVIGPAT TTIYLMSYNP NMRLLVIDDD QPSLCDNIIN KRPGFELSSL
LKKKKLPNKA NGTTPDSGIS GPVKFDENNP NTFVNPYPNP KNPLIKELSM AVTVKGYVSN
NLPPFGAFKD SMLYDNQHGL LPKKYNELAK VELYQDSVSR QIEDMNSTLS TDLDTQVLFC
VMAVLREVSV RNS
|
|---|
| |