| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_89018 |
|---|
| Symbol | SOD1 |
|---|
| ID | 4838455 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009044 |
|---|
| Strand | + |
|---|
| Start bp | 772632 |
|---|
| End bp | 773607 |
|---|
| Gene Length | 976 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640389770 |
|---|
| Product | Superoxide dismutase (Cu-Zn) |
|---|
| Protein accession | XP_001384104 |
|---|
| Protein GI | 126135160 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2032] Cu/Zn superoxide dismutase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.204777 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | CGTAATCAAC TAACAAATTT ACAATGGTTA AAGCTGGTAT GTAACTCGAT AGATACGGAT
GGGATATGGG CCAAGAATTG AGTGCAATTG AGTTCAATTG AGTGCCAATT GGTTTTGAAA
GTAGAGACTG TGAAATATGC AGAGGATTAC GTGAATCAAT GCCAATAACG GCTCGTTTGT
GGACTCAATG GCTTTGTTCG GTATTTTTAT GGCATGCAAA CTGAAGTTGG GCGAGATGCT
GCTAGCTGAG GATGTATTTC ATATATTTGA TCTGACAAAT AATCACAGTG GAGTTTTTCG
TAATTGGAAG TCCCCACTAA AGTTTTCACT CTCTCCACGG GATTCCCTAC TCGATGTCTC
GTTACAGAGA TTACTCCAGG TATACTGTGG AGTTGCACCA AGGAGGTTAA TTGAAATTGC
ATCAAATTCG GCTTATCTCA GATTTTTTTT CATCTACTAA CATGTCCTAG TCGCTGTTTT
AAGAGGAGAC AAGACTGTCT CTGGTGTCGT TCACTTCGAA CAAGAAGCTG AAAGTGATCC
AACCACCATC ACCTGGGAAA TCACCGGTAA CGATCCAAAT GCTTTGAGAG GTTTCCACAT
CCACACCTTC GGTGACAACA CCAACGGTTG TACCTCGGCT GGTCCTCACT TCAACCCATT
TGCTAAGACT CACGGTGCCC CAGAAGACGA CGAAAGACAC GTTGGTGACT TGGGTAACAT
CACCACTGAC GGCTCTGGTG TTGCCAAAGG TACCAAGCAA GACTTGTTGG TCAAGTTGCT
CGGTGTTGAC TCCATCATTG GAAGAACCGT CGTTGTCCAC GAAGGTACTG ATGACTACGG
TAAGGGTGGT TTCGATGACT CCAAGACCAC CGGTCACGCT GGAGGCAGAC CAGCCTGTGG
TGTCATTGGT TTGACCCAAT AAGTGCTATG TTATAGTTTG TAGTCGGTTT GTATTGCAAT
ATCTATGAAT ATGATC
|
|---|
| Protein sequence | MVKAVAVLRG DKTVSGVVHF EQEAESDPTT ITWEITGNDP NALRGFHIHT FGDNTNGCTS
AGPHFNPFAK THGAPEDDER HVGDLGNITT DGSGVAKGTK QDLLVKLLGV DSIIGRTVVV
HEGTDDYGKG GFDDSKTTGH AGGRPACGVI GLTQ
|
|---|
| |