Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_88926 |
Symbol | RBP2 |
ID | 4838994 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009044 |
Strand | + |
Start bp | 106720 |
End bp | 109962 |
Gene Length | 3243 bp |
Protein Length | 844 aa |
Translation table | 12 |
GC content | 42% |
IMG OID | 640390309 |
Product | conserved hypothetical protein DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain |
Protein accession | XP_001383979 |
Protein GI | 150864953 |
COG category | [R] General function prediction only |
COG ID | [COG5141] PHD zinc finger-containing protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.492923 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | AAAATTACTG CTGTCAAGTT GTGTCTGTCT TGAATTTTCT GTCTGAAGCA ATTATCTTTC TGTCAGACAA ACGTTCTTAT ACTGGGGAGT TTTGACTTTT TGTCGGAGTT GCGTAGTGTC TGTGTAACGC AATTGTGCAT TCTCCGCTAA TATCAGAATC CATATTTTTG CTAAAGAGAG CTGAAATTGA AATTCTGCAA TTTTGTAATT ACACCATTAT CTCCTGCTAT TTGAAGCCGG TTCTGACGCT GCTGTTAGGT AATATTGACT CGGCTGACAT TGATATTGGT TTCTAGTTGT TTTATCGCTT CTGCCGTTGG CTCTGTGCGA TTTTCTATCA TTGGCTGGAT TGGCTAGATT AGCCCTAACT AAGTTCAGAA GTTCCAGAGT TTTTTGGCTG GTATTTCGTT TCCATTTCGT GTCTATTGTA ATTCGTAGTA GCTCAAATGT TTGACAAGCT GTTACTAACT CCGTGTCCAG TTCTCCGTCC CTCGGAAGAA GAATTTGGTG ATCCCATCGG ATACCTCTCT CGGAAGGACA TAAGTGCACT TGGTGCTGAG TATGGTATTG TCAAAATTGT GCCTCCAGAC TCGTGGAAGC CCCCATTTAT GATTTCTGAT GACTTTCGTT TCCACACAAG ACTCCAGAAG CTCAGCGACT TGGGTTTGTC GACTCGGTGC CGCAAGTTCT TTCGAGACAA TATCAATCGG TTTATGAAAA TGCGTAGAAA GCGACCCTTG CGATTGTACT TCCGGGCCAT CGATCCTTTG GTTCCGACTA GATTTATCAA GGTCTACTAC TACGATCTTT ATGTAGCAGT AGACAACCAT GGGGGCTACG ACAAGATGAC GTCCGAGTCG TGGAGTAAAG TGAATAGCCA GTTTGGAGTC GCTGCTGACT CAAATCGCAT ACGAGACGTA TACGAAGCCA ACTTGCTTCC CTATGCGAGC TATATAGATC ATAACAACTT CAACTACCAT TTCCCTCAGA GCGATCTGGA AGACGAGTTT GACAATTGCT TAATCTGTGG GAAACACGAC AGACCCTCTA GAACTTTGCT CTGCGACAAT TGCGACAACC CTTATCATAT GGACTGTCTA CCTACTCCGC TAGATGACAT CCCAAATGGC AATTGGTACT GCGACAAGTG TGTCATCGGA ACTGGTGAGT ATGGCTTTGA AGAAGAGGTC GATGTTAAAT ACACCATCGA TGAGTTCGAG AACGAGTGCG AGCAGTTCAA GCAGGAGTTT GAGGAAAAGT ATAACCGTGG AGAGCCTCTA ACTGTGGATA CCATCGAAAA GCGGTTCTGG GACTTTGTAG AAGCGCAGAA CTCAGAAATA CAAGTCAAGT ACGGAGCGGA CATTCACAAC TTGGTGCCTG GTCAGATCAG TGGATTCCCT ATGGAAAATA CTCCGGGTAT TAATGCTAAG GACCTGGAGT CCCAGAATTA TATCAACCAT CCTTTCAATC TTACAAGACT TCCATTTGCA AAAGGGTCGT TGCTTAACTA CATTAACACG AGCATTTCTG GAATGACGGT ACCCTGGATC TACGTTGGCT CTTTACTCTC GACTTTCTGC TGGCATGTAG AAGACCATTA CACTCTTTCT GCTAACTACT GTCATATGGG AGCCACTAAG AAATGGTACG GTATCCCATC GTCACAAGCG AATCAGTTCG AGAAATTGAT GAGAGAGTCA GCTCCAGATT TGTTCAAGCG TCAGCCGGAC TTGTTGCACC AACTTGTGAC TTTGATGTCG CCCATGAAGC TAGTGGAAAA TGGGATCCGT TGTGTTTACG CTGATCAGAA TCCGCGAGAA ATGGTGATAA CTTATCCTAG AGTGTATCAT GCTGGTTTCA ACTGTGGATT CAACTTCAAC GAAGCTGTCA ACTTCACCAT GAACTGCTGG CTTGAATTCG GTGAAAGATC TATCAACGAT TACCTGTTGA TCGGCAAAGA AAATGTGTTT AATCACTACA AGTTGATTGA AAACATCCTC AAGGCTTTCA ACAAACAAAG AGGAAGCATC AGTCGAGAAG AAATTGACGT AGTCAAACGA AGCTTGCTAA GTTTCGAGTC CTATATACTC AAGCAGAATG ACCTTCTTTC ACAAATCGAC AAAACAAAGC TTGTCCAGGA GTACATCCCC AAGAAGTTTT CACCAAGAAA GTTTGAAGAA GAACAGGCTG GTATTTATTC CACTGATGGT GATGATGAAG AGGACTTGTG TGATTTGTGT AAAACCCATC TTTCGTATCA GTATTGCATC GTCAACAATA GGAACCATAA GTTTCGGCAA CATCTCGCTT CTACAGCTCC TGCGTTTGCT ATTAATTCTG CTACTGATAC TGCTGCTGCT GTTGCTAATA CTAATGCTGC TAATACTACT GCTACTAATT CTGCTACTAA TAGTGTAGTC ACTAATTTTG CTGATAATAC TGCTATTAAT GCTTGTTCTA GTAGTAGTGT TCCTACTGTT GCTGCTACTA GTTCTCCTTC CATTGCGCCA GCATCCACTA CTGTTATAAA GCAAGAGCCT ACAGAGATCA GAAGAATTAC AATTCAACAG CTTCTCACAC CAGATTCGTC GCCGTATGAA TCAAAGAAAA CGTTTGAAGA ACTGACTGTA GATGTCGGCA AATTGGCTAC TTCAGAAGCT GCTCTCAGTA TGTCGAAGTT GAATGAAACA AAGACGGCAG AGACAGGTAG TAAAGCCGAT GCAGGTAAAG GCGAAGATAA AGGCGAAGAT GAAGGTGATG ATGAAGACGA CGAATCAAAG TTATGCATGA TGGAACAATT CGACGAATTG ATAAATAACG CAAAGAGAGC AGCTTCGGAA GAATTACAAA ATACGGAGTC TGGTCAAAAG AGACGGCACT CTCGTCGTTT ACAGGAACTA CCAAAGGTTC AAGAAATAAA GAAAGAGAAA GAAGGTGTCC AGACAGTTGC TAAACGTCGT TCCTCTAGGC CAACTGGGAA AATGACTGGG AAAATGATGG CTGTGCAACA ACGTTCAGAA ATCAAGCAGT TGAACGAAAA GGACACCATC AGGCTATGCT TATCGTGCTT TATTAAGACA TACGAAAATA GCGATGGAAA GGTACCAGTT CCTGAGGAAT CCATTCTTCA TTTTGAGAGT TATCCTTCGC AATTGAAAGA ATTGGTGAAG CTGACAAAGA GAAATATCAA CGAATTGTTC TTGTGATTTA GTATTTAGTG AATAAAATAG AGTCCAATGA GAA
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Protein sequence | MFDKSLLTPC PVLRPSEEEF GDPIGYLSRK DISALGAEYG IVKIVPPDSW KPPFMISDDF RFHTRLQKLS DLGLSTRCRK FFRDNINRFM KMRRKRPLRL YFRAIDPLVP TRFIKVYYYD LYVAVDNHGG YDKMTSESWS KVNSQFGVAA DSNRIRDVYE ANLLPYASYI DHNNFNYHFP QSDSEDEFDN CLICGKHDRP SRTLLCDNCD NPYHMDCLPT PLDDIPNGNW YCDKCVIGTG EYGFEEEVDV KYTIDEFENE CEQFKQEFEE KYNRGEPLTV DTIEKRFWDF VEAQNSEIQV KYGADIHNLV PGQISGFPME NTPGINAKDS ESQNYINHPF NLTRLPFAKG SLLNYINTSI SGMTVPWIYV GSLLSTFCWH VEDHYTLSAN YCHMGATKKW YGIPSSQANQ FEKLMRESAP DLFKRQPDLL HQLVTLMSPM KLVENGIRCV YADQNPREMV ITYPRVYHAG FNCGFNFNEA VNFTMNCWLE FGERSINDYS LIGKENVFNH YKLIENILKA FNKQRGSISR EEIDVVKRSL LSFESYILKQ NDLLSQIDKT KLVQEYIPKK FSPRKFEEEQ AGIYSTDGDD EEDLCDLCKT HLSYQYCIVN NRNHNVPTVA ATSSPSIAPA STTVIKQEPT EIRRITIQQL LTPDSSPYES KKTFEESTVD VGKLATSEAA LSMSKLNETK TAETGDDEDD ESKLCMMEQF DELINNAKRA ASEELQNTES GQKRRHSRRL QELPKVQEIK KEKEGVQTVA KRRSSRPTGK MTGKMMAVQQ RSEIKQLNEK DTIRLCLSCF IKTYENSDGK VPVPEESILH FESYPSQLKE LVKSTKRNIN ELFL
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