| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_88869 |
|---|
| Symbol | |
|---|
| ID | 4838379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009044 |
|---|
| Strand | + |
|---|
| Start bp | 413774 |
|---|
| End bp | 415319 |
|---|
| Gene Length | 1546 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640389694 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384036 |
|---|
| Protein GI | 150864995 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5062] Uncharacterized membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | AACTCTCGCT CCATGAGCTC CCTCAAAGAA CAAAAGGAAC AGTTCGTGTC CGACTTGCTA
GGCGGCTCTG TTCTGGAAAT CTACGCCGTC ACCGGTGTGG CTCTAACCTC ATACTTGGCA
TTCAGAATCT ACGACGTCCT AGTCAGCCAT GAGGTCTCGT TTCTCTACGA CTTCATCCTC
AATTGCCTAC CCATCTTGGT ACTGATCACC TTATACAGCG ACAAAGTCAC CACGTTGCAT
TTGGCCATAA TTGTGCCGAT TTTGCTGATT TTCGTCTTTT CCAAATACAC CTTTCCTGAT
TTATGGAAAT CAAATGGTGA AAGGACTAGC CAGAATGAAA ACAAACAGCT GAAATCTGCT
GAAAAACAAC TTCTACCCAA AAAGTCATTC ATCACAGCAT ACAGAGCCCA CATGCTCATA
ATAACCAACT TGGCTATCTT GGCCGTGGAC TTCAATGTCT TTCCTAGAAG ATTTGCTAAG
GTCGAAACCT GGGGTACTTC CCTTATGGAC TTGGGAGTAG GCTCGTTTGT GTTCTCAATG
GGGTTGGTCA ATTCCCGAGC CATTATCAAG AATAAGTTTA ACCGCGGATC CAGTGATAGT
GGCTATAAAT TCAGCGTCGT GGATTACTTC TCAGTTGTGA AAAGGAGCAT CGTGAAATCA
GTGCCTTTGC TAGTTTTGGG TGGTGCCAGA CTCGTCAGTG TCAAAAGCTT GGAGTACCAA
GAACATGTCT CTGAGTATGG AATTCACTGG AATTTCTTTA TCACCTTGGG CTTGTTGCCG
GTTTTGCTCG GAGTATTGGA CCCTGTGTTG AATGTAGTGC CGAGAGCTGT TGTAGCCCTT
GTTATCACCA TAGGATACGA GATTGTATTG GTCAACACAG AATTGTTGAG ATTCATCTTA
GTTAGCGACA ACAGACTTCA AAACTTGATC ACCATGAATA AGGAAGGCAT TTTCTCCTTC
TTCGGCTATT TTGCTATATT CGTGTTTGGC CAGTCCTTCG GATCATTTGT TTTGACTAAC
TATAAGACAC CCTACAACAT GCTTACTTTT GTTCCTCAGA AGGAAACTTC TGGCAAGAAA
AAGAAGAAGC ATTCCCAAAT AAAATCGTGG CTCACGGTTA ACACCACGAA TGGTTTGATC
ATCGCCAGCA TCTTCTACCA GTTGCTCTTT TACTTTGTAC GGGAATCGGG CTACATCTTG
AACGTATCCC GTAGATTGGC CAACTTGCCC TATGTCTTGT GGGTTGTGTC ATATAATGCA
ACGTTGTTGT TGGGATACAA CTTAATCGAG AAGTTCTTCC CTGAGAGCCA TGAGTCGTAT
TTGTTGGAAT CTACCAACAG CAATGGACTC TTGATCTTTT TGATAGCGAA CGTTTCTACG
GGTTTGGTTA ATATGACCAT CAACACTTTG GAATGCTCTG ATCCAGTCGC TTTTGCCATT
TTGACAGTGT ATGCTGCTGG ATTGTGTTTA TTGTCCAACT TATTGAACAA TAAGGGTATC
TATGTAAAGC TTTAGATAGA CTAAAAGTAT ATGATTTTTG AGATTT
|
|---|
| Protein sequence | MSSLKEQKEQ FVSDLLGGSV SEIYAVTGVA LTSYLAFRIY DVLVSHEVSF LYDFILNCLP
ILVSITLYSD KVTTLHLAII VPILSIFVFS KYTFPDLWKS NGERTSQNEN KQSKSAEKQL
LPKKSFITAY RAHMLIITNL AILAVDFNVF PRRFAKVETW GTSLMDLGVG SFVFSMGLVN
SRAIIKNKFN RGSSDSGYKF SVVDYFSVVK RSIVKSVPLL VLGGARLVSV KSLEYQEHVS
EYGIHWNFFI TLGLLPVLLG VLDPVLNVVP RAVVALVITI GYEIVLVNTE LLRFILVSDN
RLQNLITMNK EGIFSFFGYF AIFVFGQSFG SFVLTNYKTP YNMLTFVPQK ETSGKKKKKH
SQIKSWLTVN TTNGLIIASI FYQLLFYFVR ESGYILNVSR RLANLPYVLW VVSYNATLLL
GYNLIEKFFP ESHESYLLES TNSNGLLIFL IANVSTGLVN MTINTLECSD PVAFAILTVY
AAGLCLLSNL LNNKGIYVKL
|
|---|
| |