| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_83690 |
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| Symbol | SNF2 |
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| ID | 4838915 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009044 |
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| Strand | - |
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| Start bp | 653510 |
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| End bp | 658492 |
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| Gene Length | 4983 bp |
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| Protein Length | 1566 aa |
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| Translation table | 12 |
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| GC content | 42% |
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| IMG OID | 640390230 |
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| Product | component of SWI/SNF global transcription activator complex |
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| Protein accession | XP_001384421 |
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| Protein GI | 150865273 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0631887 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGCC AGTTGACACG TGAGGACATC CACCGTATCG TCGACAGATG GAAACAATTG
AAGGCCCAGT TTGGCGACCA GGCCATCAAT GTTCCTGAAT TTGCTCAGTT GAACAAGATA
GTGAAATATT TCAACCAGCA ACAGCAGATG CTCCAGCAAA ATCCGAACTT GAGACAACAA
CAGCAGCAAC AGCAGCAACA GCAGCAACAG CAGCAACAAC AGCAACAACA ACAACAACAG
CAGCAGCTCC AGAACCAGAA CCAACAAAAT CCAGCCCTTA ACCCACAAAG CTCGAGCCAA
CTCAATAACC AACAAATTCC ACAACTGCTT CCACAGCAAC AACACCAGGG TATCCATCCA
CAGGGAACAC CTCTGCACGT GCAAGCACAG CTCCAGCAAC AACAGAACTA TGGCCAGATG
AAGTCGTTGA TGGGTGCTTC CAATAGCTCC ACACCTCAGG TCCAGAACCT GAACTTGATC
ACGGGACCAA TGAACACAAG CCAAATTCCG ACTCCACAAC AGCAGCAACA GCAACAATTT
CCTCAGTCGC AATCACTTAA CCAGATGCAG TTTAACAACA ATAACAATAC TAGCAATGGT
ATGAATGGCA CCAATGGTGG TGCTGGTTCT GGATCTGGTT CACTTTCTAG TTCTGGAGGT
CCTGGGACAG TATCTGGGAC CGGTTCTGGT TCCCAGGGAA GTTCGAGTGA ATCTGCATTT
ACCACTCAAC AGTTTCAACT TGTAAAGTCG CAGTTTCAGG CTCTCAAGTA TCTTTTGAAC
AAGCCTGGAG CCAACAATCC CCCTATTCCG CAGAATTTGA TCTCGTTTGT TACTAACGAC
AGATCTGCTG TTCCTAGCGG TGGATATCTT CCTGCAAGAC CTGGATTTCA GCAGCCTTCT
AACGATGGAC TCTTAAACCA GAATGTGATC GGAATGCAGC AGGGCAATCT CAACAAGGGA
ATGATTCCGG GCCAAAATGT AAACCAGAAC TTGTCAATTA AGAATAACAC CGATGTTAAT
AATTTGAACA ATCTTAATAA TAGTAAACCG CCTATCAAGA TGGAGGCATC GAAACAGAAA
GTATCAGTAC CGATACAACA GATTCCTCCA CAATCCCAAC AACTTCAACA ACCAGTTCTG
AAACCTATAA AGCCTGAAGG TTTGTCCGAT TCTGGTAGAT TGACTGATTC CCTTTTGAAG
CTGAAGCCTT ACATTCGTCA ACCACAACCT CCTGTTCCTC TCAGTAAACT TGTTCCTGAT
AAGACTAGCG ATAGCAAGAA CATTATCATT CCCATAAACA AGCCAAATGT ACAAGTGGAC
AGTTTTGAAC TTCCAGAGAT ATTTGGAGAT TCTGTGAAAG ACATTGAGTA TGGTGAGATC
TACTCTCCAC AGAGTCGTCG TCAAATTCCG GGATTGATGC CTGATGGAAT CAATTCCCAG
GAAATCTTTA ACAACAAAGA AGCATTTATT GTGATGCAAA TTGAGCTTGA AATGGACTCA
TTGAGAAAGA AACTCGATAC TATTCAAGAC AATGATAAAG AGCGCCAGAG AATTGAGGCG
GAATTGGCTC TGTTAGAGAT GATTCCTTTC CAAAAGGAGT TGCGCGGGAA GTTGTTGTCA
CAAGTCTGGT TCAGCAAGTC GTTGTTGCCC AATTCTCATC CCAACTTCCT AGCAAAGTTC
AACACCTTAT CTCTTGAAAA TGTTGCTACA GCTCACGATC TCTATAGACA CCAATTGGAA
ACTTTACTTC AAGTGCAGAA CCAGAAGCAT CAGAGCACTA TCAATGAGAT CTTGCTGTAC
AGAGAAAATA AGGATGTAAC TCTTGCGAGA AGAAGAGATC GCCTCAACAG GTTTGCCACC
AAGATCAGCA GTTTCCACAA TCAGACAGCC AAGGAAGAAC AGAAGAGAAT AGAAAAGATG
GCCAAACAAC GTTTGCAAGC TTTGAAGCTG AACGATGAGG AAGCCTATTT GAAATTGTTA
GACCACACAA AAGATACTAG AATTACGCAT CTTTTGAAAC AGACCAACCA GTTCTTGGAT
TCGTTGGCTC AAGCTGTCCA GAACCAGCAG AGGGAGACCA GTGAAAGATT TGCCATAAGA
GACGGAACTC TGGTGGAGAC TAATGATGAA GACAAAAGAG AAAAGGTAGA CTACTACCAT
GTGGCTCATC GGATCAAGGA AGAAGTCACT AAACAACCTT CTATCTTGGT AGGAGGTACT
TTGAAGGAGT ATCAGATTAA GGGTTTACAG TGGATGGTTT CGTTATTCAA TAACCATTTG
AACGGTATCT TGGCTGATGA AATGGGATTG GGTAAGACTA TTCAAACTAT TTCTTTGATT
ACATACTTGG TGGAAGTTAA GAAGATCAAT GGACCATTTT TAGTGATTGT ACCCTTATCA
ACGTTGACCA ATTGGAACTT AGAATTCGAT AAATGGGCCC CATCAGTGAA GAAAATCACT
TATAAAGGTA CACCTAACCA ACGTAAGGTT ATGCAACAGG ATATCAGACA GGGTAATTTC
CAAATCTTGT TAACTACTTT CGAGTACATT ATCAAGGATA AGGCGCTATT GTCGAGAATC
AGGTGGGTAC ACATGATTAT TGATGAAGGA CATCGTATGA AGAATGCCAA CTCCAAACTT
TCTGAGACAT TGACCCATAG CTATCACAGT GACTACCGTT TGATTTTGAC AGGTACTCCC
TTACAAAATA ACTTACCTGA GTTGTGGGCT CTTTTGAATT TCGTTTTGCC CAAGATATTC
AACTCAGTAA AGTCGTTTGA CGAATGGTTC AACACTCCTT TTGCCAACAC TGGTGGACAG
GACAAGATCG AATTAAGTGA AGAAGAAACT TTATTGGTTA TCAGAAGATT GCACAAGGTG
TTGAGACCTT TCCTTTTGAG AAGATTAAAG AAGGATGTAG AAAAGGACTT ACCCAATAAG
GTCGAGAAAG TGGTCAAATG TAAGATGTCA TCTATACAAT CGAAGTTGTA TCAGCTTATG
TTGAAATACA ACATCTTGTA TGCTAGTGAC CCTAATGGCC CCAGTGATGT TCCGTTAATC
ATCAAGAATG CTAACAATCA GATTATGCAA TTGCGTAAGA TTTGTAACCA TCCATTTGTT
TATGAGGAAG TGGAGAATTT GATCAATCCT ACTATTGAAA CAAGTGATAT CATTTGGAGA
GTTGGTGGAA AGTTTGAGTT GTTGGACAAG ATTTTGCCCA AGTTCAAGAC CACTGGCCAT
AGAGTGTTGA TTTTCTTCCA GATGACCCAG ATCATGGATA TCATGGAAGA TTTCTTGAGA
TTGCGTGGAA TGAAATATAT GAGATTGGAT GGTGGAACCA AAGCCGACGA TAGAACTGCT
TTGTTGAAGT TATTCAATGC CCCAGATTCC GACTATTTCT GTTTCTTGTT GTCTACCAGA
GCTGGTGGTT TAGGTCTTAA CTTGCAGACA GCAGATACTG TTGTCATTTT CGACACTGAT
TGGAACCCGC ATCAAGATTT GCAAGCTCAA GACAGAGCTC ATAGAATTGG ACAGAAAAAC
GAAGTGAGAA TTTTGAGATT GATTACCGAA GATTCTGTCG AAGAAATGAT TTTGGAAAGA
GCTCATGCTA AGTTAGAAAT TGATGGTAAG GTCATCCAGG CTGGTAAGTT TGATAACAAG
TCTACTTCCG AAGAACAAGA GGCTATGTTG AGAGCCTTGA TCGAAAAGGA GGAAGAACGT
AGACAGCATG GAAATGACGA GGAAGAAGAA GACTTGAACG ATGACGAGCT CAATCAGATT
ATCGCCAGAA ATGACCTTGA GTTGGTGACG TTCAGAAGAT TGGACGAAGA AAGAGCACAA
GCTACCAAAG AAGCGAAATA CCCAACGAGA TTGTTTTCTG ACCAGGAATT GCCTGAGATT
TACCAGAAGG ATCCCGAAGA GTTGATCAGG AAGGATGAAG TGATTCTAGA AGATTATGGA
AGAGGTACAA GAGAACGAAA GACGGCTACC TATGATGATC ATTTGACTGA AGAGCAATGG
TTGAGACAAA TTGATGGTGT TGTTTCTGAA GACAGTGATG ATGAGGTAAA AGCCAAGCCT
TCGAAGTTGA AGAGAGGAAG ACCTCGTGGA AGACCCAGAT CAAAGGGCCC TGAACCTTCT
GATAGCAAAG AAGGCACTCC CGATGTAATC CAGACAGATA CTGAGTCTGT TACTTCTGTG
AAAAGAGCTT TGACTGATGA AGCTATAGCT TCTGCCAAAC GTCAAAAGTC CGCCACCCCT
AAGCCAGCAC CCGCCAGTCG CTCCAAGAAG GCAGCAGCTC GTAACAGAGG TGCCCGTAGT
AAGATATCAC TCTTGAATCG TTCAACTCCA TCAGTGGATC CATTGACTCC TGATGAAAGA
GCACAATTGC AGAATGTTCT TGAGACAATC TATGGTTTAG TTATCAACTA CAAGAACTCT
CATGACAGAA GATTGAGTGA CTTGTTCATG GTGAAGCCAT CGAGAAAGCT CTATCCAGAC
TATTATGTCT TGATCAAAAA TCCAATTGCT TTAGACATTG TAAAGAAGAG AGTGTTTTCC
AAGACTTATA GCCAAATCAG AGAGATGTTA GAAGATATAC ATTTGATGTT TAGCAACGCC
AGAATCTACA ATGAGGAAGG TTCTATTGTG TATCAAGATG CCACAGCTCT CGAGCAATTG
GCCATTGATA AGTTCAAGGA GATGTCAGGT GATTTGAGCG CTGAAGAAAT TGAAAAGATT
CTTGACTTTA GAGAATTTGA CGAGACCTTC AACTTGAAAC CTTTGGTAGT TCCAGCTGCC
ATAAAACAAC CAGTAGAAAC CAAACTCGAG CAACTAGACA ACGACGAGCC TATTGACAGT
CCCCTAGTTG GAATCTCCAC CAATGGTGGA ACCGAGTTGT CTACGCCCGT AAACCCTTAG
ATAGGGATCG GACATGTATA ATACAATCGA TACACGGTAA CATTAATATA TTAAATTTCA
TAA
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| Protein sequence | MNRQLTREDI HRIVDRWKQL KAQFGDQAIN VPEFAQLNKI VKYFNQQQQM LQQNPNLRQQ
QQQQQQQQQQ QQQQQQQQQQ QQLQNQNQQN PALNPQSSSQ LNNQQIPQSL PQQQHQGIHP
QGTPSHQQQQ FPQSQSLNQM QFNNNNNTSN VSGTGSGSQG SSSESAFTTQ QFQLVKSQFQ
ALKYLLNKPG ANNPPIPQNL ISFVTNDRSA VPSGGYLPAR PGFQQPSNDG LLNQNVIGMQ
QGNLNKGMIP GQNVNQNLSI KNNTDVNNLN NLNNSKPPIK MEASKQKVSV PIQQIPPQSQ
QLQQPVSKPI KPEGLSDSGR LTDSLLKSKP YIRQPQPPVP LSKLVPDKTS DSKNIIIPIN
KPNVQVDSFE LPEIFGDSVK DIEYGEIYSP QSRRQIPGLM PDGINSQEIF NNKEAFIVMQ
IELEMDSLRK KLDTIQDNDK ERQRIEAELA SLEMIPFQKE LRGKLLSQVW FSKSLLPNSH
PNFLAKFNTL SLENVATAHD LYRHQLETLL QVQNQKHQST INEILSYREN KDVTLARRRD
RLNRFATKIS SFHNQTAKEE QKRIEKMAKQ RLQALKSNDE EAYLKLLDHT KDTRITHLLK
QTNQFLDSLA QAVQNQQRET SERFAIRDGT SVETNDEDKR EKVDYYHVAH RIKEEVTKQP
SILVGGTLKE YQIKGLQWMV SLFNNHLNGI LADEMGLGKT IQTISLITYL VEVKKINGPF
LVIVPLSTLT NWNLEFDKWA PSVKKITYKG TPNQRKVMQQ DIRQGNFQIL LTTFEYIIKD
KALLSRIRWV HMIIDEGHRM KNANSKLSET LTHSYHSDYR LILTGTPLQN NLPELWALLN
FVLPKIFNSV KSFDEWFNTP FANTGGQDKI ELSEEETLLV IRRLHKVLRP FLLRRLKKDV
EKDLPNKVEK VVKCKMSSIQ SKLYQLMLKY NILYASDPNG PSDVPLIIKN ANNQIMQLRK
ICNHPFVYEE VENLINPTIE TSDIIWRVGG KFELLDKILP KFKTTGHRVL IFFQMTQIMD
IMEDFLRLRG MKYMRLDGGT KADDRTALLK LFNAPDSDYF CFLLSTRAGG LGLNLQTADT
VVIFDTDWNP HQDLQAQDRA HRIGQKNEVR ILRLITEDSV EEMILERAHA KLEIDGKVIQ
AGKFDNKSTS EEQEAMLRAL IEKEEERRQH GNDEEEEDLN DDELNQIIAR NDLELVTFRR
LDEERAQATK EAKYPTRLFS DQELPEIYQK DPEELIRKDE VILEDYGRGT RERKTATYDD
HLTEEQWLRQ IDGVVSEDSD DEVKAKPSKL KRGRPRGRPR SKGPEPSDSK EGTPDVIQTD
TESVTSVKRA LTDEAIASAK RQKSATPKPA PASRSKKAAA RNRGARSKIS LLNRSTPSVD
PLTPDERAQL QNVLETIYGL VINYKNSHDR RLSDLFMVKP SRKLYPDYYV LIKNPIALDI
VKKRVFSKTY SQIREMLEDI HLMFSNARIY NEEGSIVYQD ATALEQLAID KFKEMSGDLS
AEEIEKILDF REFDETFNLK PLVVPAAIKQ PVETKLEQLD NDEPIDSPLV GISTNGGTEL
STPVNP
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