Gene PICST_83540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_83540 
SymbolASN1 
ID4838720 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009044 
Strand
Start bp1196823 
End bp1198692 
Gene Length1870 bp 
Protein Length573 aa 
Translation table12 
GC content47% 
IMG OID640390035 
Productasparagine synthetase 
Protein accessionXP_001384527 
Protein GI126136006 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0367] Asparagine synthase (glutamine-hydrolyzing) 
TIGRFAM ID[TIGR01536] asparagine synthase (glutamine-hydrolyzing) 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.163199 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
CAGAGTTCGA GGTATTTTGC CGGTTGTTTC ATATTCCATC CCTTTTCTAC CACCCTCTTC 
CTTGTCTGTC TAAATTAGCA TATTTCCAAC ATGTGTGGTA TATTTGCAGC CTATAAGCAA
CCTGAGGTTG AACTTTTCAA GTCGAAAGCT TTACAGTACT CCAAAAGAAT CCGTCACCGT
GGTCCCGACT GGTCAGGTAA CGTGATCCAG AACTCTACCA TCTTGTGCCA CGAGAGATTG
GCCATTGTCG GTTTGGACTC CGGTGCTCAA CCAATCACCT CAGAAGATGG CAACTACACC
TTGGCCGTTA ACGGAGAAAT CTACAACCAT ATCCAGTTGA GAGACGAGTT TAACACCTAC
AAGTATAAAT CGTTGTCAGA CTGTGAGCCC ATCATTCCAC TTTACGAAAA GTACGACGTC
GATGCCCCCA AATACTTAGA CGGGATGTTT GCCTGGGTTC TCTACGACAA GAAAGCTGAC
CGTATCGTAG CTGCCAGAGA CCCCATCGGT ATCACTACTT TGTATCTCGG AAAGAGTTCG
AAGAACCCCG AAACAAGATA CTTTGCCTCA GAGTTGAAGT GTTTGATCGA CGAATGTGAC
GAGGTAACGG CTTTCCCACC TGGTCACGTC TACGACTCCA ACACTGATCA GATCACGAGA
TACTTCACTC CAACATGGTG GGACGGTTCT AAGATTCCTT CGAAGCATGC TGACTTGAAG
GAAGTGAGAG AAACCTTGGA ATTAGCCGTG AGAAAGAGAT TAATGGCCGA AGTGCCCTAC
GGTGTGCTTC TTTCAGGTGG CTTGGACTCG TCGTTGATTG CTTCGATCGC TGCCAGAGAA
ACAAAGAAGG CTGCTGCTTC CGTTTCGGAT GAAGGTATAG ATGCCAACAA GGAGTTGTCT
GGTGTTGATG AAAAGGGTTC GTTGCACTTT TCTGGCTTCA CCAACTCCTT GCATTCGTTT
GCTATTGGTT TGCCAGGTGC CCCAGACTTG ATCGCTGCTG AAAAGGTAGC CCACTTCATT
GGAACTATTC ACCATTCTCA CACTTTTACA GTGGAAGAAG GTTTGGATGC ACTTGACGAT
GTCATCTACC ACTTAGAAAC CTACGATGTC ACCACCATCA GAGCATCCAC GCCAATGTAC
TTACTTTCTA GAAAGATTAA GGCCCAGGGT GTCAAGATGG TGTTGTCTGG TGAGGGATCG
GACGAAGTAT TTGGAGGCTA CTTGTACTTT GCCAACGCCC CAAGTGCTAA GGACTTCCAC
CAGGAATGTG TCCAGAGAGT CAAGGACTTG CACTACGCCG ACTGTTTGAG AGCCAACAAG
TCCACCATGG CCTGGGGATT GGAAGCCAGA GTTCCTTTCT TGGACAAACA GTTCTTGGAA
GTGTGTATGA ACATCAACCC AGAAGACAAG TTGATAAAAC CAGCTGAAGG CAAAATTGAA
AAATACGTCT TGAGAAAGGC TTTCGACACC TCGGATGAAC CAGACGTCCA CCCATACTTG
CCCAAGGAAA TCTTGTGGAG ACAAAAGGAA CAGTTCTCCG ATGGTGTTGG TTACTCCTGG
ATTGATGGCT TAAAGGACGC TGCTGAGGCT GCTGTCTCTG ACGAAGAATT TGCCAACCCT
AAGCCTGAAT GGGGATCAGA TATTCCAACT ACTAAGGAGG CCTACTGGTA TAGATGCAAG
TTTGACCGTG TGTTCAACAA CTCGGCAACT GCTGCCTCCA CTGTCATGAG ATGGATTCCA
AAGGCTGAAT GGGGCTGTCA TGAAGATCCT TCCGGAAGAT ACGCTGCCAC TCACGACCAC
AAGGTCATCT GAGAGATCTA TCTTTATAGA TTGTACATAT CACGAACCGT AAAATAAAAC
AAACATTGAG
 
Protein sequence
MCGIFAAYKQ PEVELFKSKA LQYSKRIRHR GPDWSGNVIQ NSTILCHERL AIVGLDSGAQ 
PITSEDGNYT LAVNGEIYNH IQLRDEFNTY KYKSLSDCEP IIPLYEKYDV DAPKYLDGMF
AWVLYDKKAD RIVAARDPIG ITTLYLGKSS KNPETRYFAS ELKCLIDECD EVTAFPPGHV
YDSNTDQITR YFTPTWWDGS KIPSKHADLK EVRETLELAV RKRLMAEVPY GVLLSGGLDS
SLIASIAARE TKKAAASVSD EGIDANKELS GVDEKGSLHF SGFTNSLHSF AIGLPGAPDL
IAAEKVAHFI GTIHHSHTFT VEEGLDALDD VIYHLETYDV TTIRASTPMY LLSRKIKAQG
VKMVLSGEGS DEVFGGYLYF ANAPSAKDFH QECVQRVKDL HYADCLRANK STMAWGLEAR
VPFLDKQFLE VCMNINPEDK LIKPAEGKIE KYVLRKAFDT SDEPDVHPYL PKEILWRQKE
QFSDGVGYSW IDGLKDAAEA AVSDEEFANP KPEWGSDIPT TKEAYWYRCK FDRVFNNSAT
AASTVMRWIP KAEWGCHEDP SGRYAATHDH KVI