| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_77736 |
|---|
| Symbol | CDR3 |
|---|
| ID | 4839046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009044 |
|---|
| Strand | - |
|---|
| Start bp | 866049 |
|---|
| End bp | 870609 |
|---|
| Gene Length | 4561 bp |
|---|
| Protein Length | 1470 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640390361 |
|---|
| Product | Opaque-specific ABC transporter CDR3 |
|---|
| Protein accession | XP_001384468 |
|---|
| Protein GI | 126135888 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR00956] Pleiotropic Drug Resistance (PDR) Family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | CGTTTTTCTC ACAACTATGA TTATCATTAT CTGGGATTCA ACAACGATGC GGAAGAAAGA
ATTCACAGCT TGGCCAGGGA AATGGGCCCG CAACCCAGAT TCACCTTGAA CAAGGAAAGC
TCTGCAAGCA GCAGTGCTGA GACCCTAACC GGCGAAGAAT ACGATGCTTC CGTCGTTGGC
CATATTCCGG GCCAGCGTGC AGTATTCGAC TCCATAGATC CAACCTTGGA TCCAGACTCG
GCCATGTTCA GCTCTCGTAG GTGGATCCAG AATATGAGAA GACTCATCGA TTCCGACTAC
GACTACTACA AGCCCTCTAG TTTAGGTGTA GCTTTCAAAA ACCTAAGAGT GTACGGAAAT
TTAGCAGAGT ATGACTACCA AACGACGCTC TCCAATGCCT TGCGTAAGTC CGTATCTGGC
ATGTTGCAGT CTGTGCGCAA AGAGAACCCT GATAATTTAT TTGACATTCT TAAGCCCATG
GATGGCCTTA TCAAGCCTGG TGAAGTCACA GTAGTGTTGG GAAGGCCCGG CGCTGGTTGT
TCGACTTTCT TGAAAACCAT TTCCCAACAT ACATATGGTT TCAATGTAGC AAAGGAATCA
GTGCTTTCTT ACGATGGTCT TACTCCCAAG GAAATCAAGA ATAACTTGAG AGGTGAAGTC
GTCTATTGCG CAGAGACTGA GACACACTTC CCACATCTTA CTGTAGGTGA AACGTTAGAT
TTCGCAGCCC TATTAAAGAC TCCGAGAAAC AGACCCCAGG GTGTATCTCG TGAAGCCTAC
GCAAGACACA TGTCCGATGT GGTTATGGCC ACGTATGGAC TTTCGCATAC CAGAAATACC
AAAGTTGGTA ACGACTTCAT TCGTGGAGTC TCTGGAGGTG AACGTAAAAG AGTTTCGATT
GCAGAAGTGG CTTTGGTTAA TGCCCGTCTT CACTGTTGGG ACAATTCCAC CAGAGGATTG
GATTCTGCCA CTGCTCTTGA GTTCATTACC TCGTTGAAGA CCTCAGCCAT GATCATGAAC
GAAACTCCTC TTATCGCCAT CTACCAATGT CCACAAGACG CATTCAATTT ATTTGACAAA
GTCCTTCTCT TGTACGAAGG TTACCAGATC TACTTTGGGC CAAGTCAGGC AGCTAAGAAG
TACTTTTTGA AAATGGGCTT TGAGTGTCCC CAGAGACAAA CCACCCCGGA TTTCTTAACC
TCCATCACCA ATCCCAACGA AAGAATCATC AGAGCCGGAT ACGAAAAAGT TGTTCCTCGT
ACCCCAGAAG AGTTCTACGA CTTCTGGCAA AGTTCTCCAG AAAGGGCCCA ATTAATCCTT
GACATCGACA CCTATTTGGT TAAGACGCAA AAGAAAAAGG ACGCTAAACA CAGACTTTTG
GACTCTCACC ACGCCAAACA GGCTAGCAGA GCCAGCAAGA AATCGCCCTA CACCAGTTCG
TTCTCAATGC AAGTCAAGTA TATCATGCTC AGAAACTGGA AAAGAACCTT GGGAGATCCT
TCGCTCACGA TTGTCACCTT CTTTGGGAAT ACGGTAATGG GTCTCATTAT CGGTTCAGTA
TTCTTCCAAT TGCACAATGA TACCAGTTCG TTTTACCTTA GAGGTTCGGT CATGTTCTTT
GCTGTTATGT TCAATGCCTA CGCTTCTATC TTGGAAGTGT TTTCTCTCTA CGAAGCCAGA
CCCATCGTGG AAAAGCACAA GAATTATGCC CTTTACAGAC CTTCAGCTGA CGCGCTTGCA
TCTATCATTA CAGAAATGCC CATCAAGATA TTGACGTGTG TTAGTTTCAA CACGATTCTC
TATTATATGG TCAACTTCAG AAGAAATGCC GGCCACTTCT TTTTCTATCT CTTGATGAGT
TTCCTTGCTA CCTTGTCGAT GTCCCATATC TTCAGAACGT TCGGAGCTGC AACTAAATCG
ATCTCGCAAG CTATGACTCC GGCGGCCATC TTATTATTTG GATTGACTAC CTTCACAGGA
TTCGTTATTC CAACCCCATA TATGCATGCC TGGTGCCGTT GGATGAGTTG GATCAATCCT
TTGGCTTATG TGTTTGATGC TCTTATCTCT AACGAATTCC ACAATCGTGA TTTCCCTTGT
TCTGATTTTG TTCCGGCTGG TCCGGGATAT CCAACCACAG GCGATTCAGT CACTTGTGCT
TCTGTTGGAG CCGTTAGAGG TTCTAACGTA GTCAATGGCG ACAAATTTAT TGCCCTTTCA
TACCGGTACT TCTGGGTCCA CAGATGGAGA AATTTTGGTA TCTTGATTGC TTTTGTGATT
TTCTTCTTGC TCACCTATAT CTTTATAGTT GAAAGAAGCA AGGCAGCTGT GCAAAAGGGA
GAAATCCTTG TTTTCCAGAG AAAGACGAGA GAAAGACTCC GCAGACTCAG AAGAAAAAGA
GATATTGAAA CTGGAAGCTT GGAGAAATTG AAAAGCACCG AATTGGATGA CGACAGAAGG
TCTTCTAAAG ATAGTTTCAT GGAAACAAAA CTTCTTGAAA CTGCTGACAT CTTCCATTGG
AGAAACTTGA CTTATACCCT CAATATAAAG GGAGAAGAGA GAACAATTCT TAATAATGTT
GATGGCTGGG TTAAACCGGG CCAAGTCACA GCTTTAATGG GTGCTTCCGG TGCTGGTAAG
ACTACTTTAT TAAACGCACT CAGTGACAGA TTGACTACTG GAGTGGTTAC TTCAGGCATT
CGTATGGTCA ACGGTGGTCC CTTGGAAAGT TCATTCCAAA GAGATATTGG ATATGTTCAA
CAACAAGATT TACATTTGCA AACGTCGACT GTAAGAGAAG CGCTCAGATT TTCAGCCTAC
TTGAGACAGC CATCCTCCGT CTCCAAGCAA GAAAAGAATG ACTATGTTGA AAATGTCATC
CACTTAATGG AAATGGAAAA GTATGCAGAT GCCGTTGTTG GTATTACTGG CGAAGGTTTG
AACATTGAAC AGAGAAAGAG ATTAACCATT GCCGTGGAAT TGGTGGCCAA ACCAAAGTTG
TTGCTCTTTT TGGATGAACC AACTTCAGGT TTAGACTCCC AGACTGCATG GTCCATTTGT
CGATTGATCA GAAAGTTGGC CGATCATGGA CAAGCTATAT TGTGTACTAT CCATCAGCCT
TCTGCTATCT TGTTGCAACA GTTTGATAGA CTTTTGTTTT TGAAGGAAGG AGGTCAAACA
GTTTACTTTG GAGACTTTGG TAAGAATTGT TCCAGCTTAA TCAGTTACTT TGAGAGCCAT
GGAGCACCTA AATGTCCTAG AAGTGCAAAT CCTGCCGAAT GGATGTTGCA GATTATTGGC
GCTGCTCCGG GTTCGTTTGC AAATCAAGAT TACCATCGTA TTTGGTTAAG TTCAAGTGAA
TACCGTAAGG TCCAGAGAGA ATTGACTGAA ATGGAAAATG AATTGGGCAA CAAGCCCAGA
ATCGAAGATG CTGATAGAAA CAAGACGTAT GCATGTTCCA TCTTTACCCA ATACTTTATC
GTTTGCAGGA GAATCTTCGA ACAATACTGG CGTACTCCTT CGTACATCTA CGCAAAGTTG
GGTATTGCCG TGATTGCTTC TCTCTACAAT GGATTTACTT TCTTCAGGTC CAACAACTCC
CTTCAAGGTT TACAGAATCA GATGCTTTCG GTTTTCCAAA TGTTCCTCAT CATGACTACC
ATGGTCCAAC AGTATCTTCC ATTATTTATT TCGCAAAGAG AATTGTATGA AGCCAGGGAA
AGACCATCCA AAACCTTCTC ATGGGTTGCC TTCATTTTAG CTCAAATCAC AGTTGAGCTT
CCATTTCAAA TCTTTGCTGG TACTTTAGCA TTCTTGTGTT GGTACTATCC TGTGGGGATG
TACAACAACG CCGTTCCAAC AGGACAAGTG GCACAAAGAG GTGCTCTTAT GTGGTGCCTA
ATGACACTTA TGTTTGTCTA CAGTTCGACA TTGGGCCAAC TTTGCATTTC TTTCAACGAA
GTTAAGGAAA ATGCGGCCAA CCTAGTTTCC TTATGTGTCA CTATGAGTAT GACATTCTGT
GGTATATTGG CTAGCAAGAA TGTCATGCCT AGATTCTGGA TTTTCATGTA CAGATGTAAT
CCATTCACAT ACTTGGTTTC GGCAGTTCTT TCAGTTGGAC TTTCTGATTC CAAGATCAAT
TGTGCTCCCA ACGAATTTTT GCAGTTCTCT GCTTTAGGGA ACCAAACCTG TGGACAATAC
ATGGCCCTAT TCCAATCCTT TGTCGGTGGT ACCCTTTTGG ACCCTGAGGC TACAGAATGC
AAATTCTGTT TACTCAAGAA CACCAATGAC TATTTGGATA CAGTGGGAAT TAAATATTCT
ACCGTTGGCC GTGACATCGG AATCTTTGTT TCATTCATTG GTTTCAACAT TATCGGCACT
ATCTTCCTTT ACTGGTTGGC CAGAGTTCCA AAAGGAAATA GACAACAAGC ATACCCTAGC
ATTTTAACTA AGGCTTTCGG TTTCTTGTCA TTCTTCAACA TGGCAAATCA CTGATTTCCT
TTCTAACATA CGAAAAGTCT ATGTCTGTAT AGATATATTT ATTGTAATTT ACGAATACCT
T
|
|---|
| Protein sequence | MGPQPRFTLN KESSASSSAE TLTGEEYDAS VVGHIPGQRA VFDSIDPTLD PDSAMFSSRR
WIQNMRRLID SDYDYYKPSS LGVAFKNLRV YGNLAEYDYQ TTLSNALRKS VSGMLQSVRK
ENPDNLFDIL KPMDGLIKPG EVTVVLGRPG AGCSTFLKTI SQHTYGFNVA KESVLSYDGL
TPKEIKNNLR GEVVYCAETE THFPHLTVGE TLDFAALLKT PRNRPQGVSR EAYARHMSDV
VMATYGLSHT RNTKVGNDFI RGVSGGERKR VSIAEVALVN ARLHCWDNST RGLDSATALE
FITSLKTSAM IMNETPLIAI YQCPQDAFNL FDKVLLLYEG YQIYFGPSQA AKKYFLKMGF
ECPQRQTTPD FLTSITNPNE RIIRAGYEKV VPRTPEEFYD FWQSSPERAQ LILDIDTYLV
KTQKKKDAKH RLLDSHHAKQ ASRASKKSPY TSSFSMQVKY IMLRNWKRTL GDPSLTIVTF
FGNTVMGLII GSVFFQLHND TSSFYLRGSV MFFAVMFNAY ASILEVFSLY EARPIVEKHK
NYALYRPSAD ALASIITEMP IKILTCVSFN TILYYMVNFR RNAGHFFFYL LMSFLATLSM
SHIFRTFGAA TKSISQAMTP AAILLFGLTT FTGFVIPTPY MHAWCRWMSW INPLAYVFDA
LISNEFHNRD FPCSDFVPAG PGYPTTGDSV TCASVGAVRG SNVVNGDKFI ALSYRYFWVH
RWRNFGILIA FVIFFLLTYI FIVERSKAAV QKGEILVFQR KTRERLRRLR RKRDIETGSL
EKLKSTELDD DRRSSKDSFM ETKLLETADI FHWRNLTYTL NIKGEERTIL NNVDGWVKPG
QVTALMGASG AGKTTLLNAL SDRLTTGVVT SGIRMVNGGP LESSFQRDIG YVQQQDLHLQ
TSTVREALRF SAYLRQPSSV SKQEKNDYVE NVIHLMEMEK YADAVVGITG EGLNIEQRKR
LTIAVELVAK PKLLLFLDEP TSGLDSQTAW SICRLIRKLA DHGQAILCTI HQPSAILLQQ
FDRLLFLKEG GQTVYFGDFG KNCSSLISYF ESHGAPKCPR SANPAEWMLQ IIGAAPGSFA
NQDYHRIWLS SSEYRKVQRE LTEMENELGN KPRIEDADRN KTYACSIFTQ YFIVCRRIFE
QYWRTPSYIY AKLGIAVIAS LYNGFTFFRS NNSLQGLQNQ MLSVFQMFLI MTTMVQQYLP
LFISQRELYE ARERPSKTFS WVAFILAQIT VELPFQIFAG TLAFLCWYYP VGMYNNAVPT
GQVAQRGALM WCLMTLMFVY SSTLGQLCIS FNEVKENAAN LVSLCVTMSM TFCGILASKN
VMPRFWIFMY RCNPFTYLVS AVLSVGLSDS KINCAPNEFL QFSALGNQTC GQYMALFQSF
VGGTLLDPEA TECKFCLLKN TNDYLDTVGI KYSTVGRDIG IFVSFIGFNI IGTIFLYWLA
RVPKGNRQQA YPSILTKAFG FLSFFNMANH
|
|---|
| |