Gene PICST_77600 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_77600 
Symbol 
ID4839012 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009044 
Strand
Start bp222654 
End bp223878 
Gene Length1225 bp 
Protein Length364 aa 
Translation table12 
GC content46% 
IMG OID640390327 
Productpredicted protein 
Protein accessionXP_001384002 
Protein GI150864970 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.884795 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTTTTTTCAA AAAAAAAGGA GGACCATTTT GCATCCACTT GAATTGTCAT AGACTGATTT 
ATGTCACAAG TTTTCACTAC TTCAACGATA CCGTTGAGCT TTGGTCCCCA GCATGAGCCG
GGGCCGAAAC ACAAACTTCC GGCGGCTGCT GCTCCAGATA AATCGCCAGA AAACGAGCCA
GTGGCCGAGC TGGCGCTGCC GATCTGGAAT TGTATGTTGG CTGGAGGATT TGGTGGAATG
GTAGGAGACA CTTCCATGCA TTCTTTGGAT ACCGTAAAAA CTAGGCAACA GGGATATCCT
CATAATCCCA AGTATAAACA TATGGTACCG GCCTACCGGA CGATATTGAA GGAGGAAGGC
TTCTTCCGGG GATTGTACGG AGGCTATACG CCTGCAATTC TAGGCTCGTT TCCGTCTACA
GCAGCATTTT TTGCAACATA CGAGTACACC AAGCGTAGAC TTATCAACGA GTACGGTATC
AACGAGACGA TGTCGTACTT CGTTGCGGGA GTTCTTGGGG ATTTAGCGTC GTCGATTTTC
TACGTTCCCT CAGAAGTCTT GAAGACCCGG TTGCAACTAC AGGGAAAGTT CAATAATCCG
TTCACGAAAG AATGCGGCTA CAACTACAAG GGCTTGATCA ATGCTGTCTC GTCGATTGCT
AAGAAAGAGG GACCATCTAC TTTTGTGTTT GGCTACAAAG AGACGTTGTT TCGGGACTTA
CCTTTTTCTG CCCTACAATT TGCATTCTAC GAGAAGTTCA GACAGCTTGC CATATTCTAC
AACAAGTCGC CGGACTTACC AGTTTCGCTT GAGCTTTTGA CTGGGGCTGC TGCCGGGGGG
TTGGCTGGAA CCTTGACGAC GCCGTTGGAC GTGATCAAGA CGAGAATTCA AACTGCAACC
AACACTGCAG AATTGTCTGA GTTCTCGTCC ATCAAGACAT CAAATCCGGT TGTCAAATTC
GTGTCGAAAT CATCGACGTT AAACGCGTTA GCATCCATCT ACAAACACGA CGGTATAATA
GGAGCGTTTT CCGGTGTCGG ACCTCGTTTT ATCTGGACCG GAATTCAGAG TTCCATCATG
TTATTGTTGT ACCAGGTATC GTTGAAACAG CTAGACCAGA TTCTCGGTAA CAACGAGGCT
GTCATGGACG CATAGTCCCT TGCATTGTAT ACTAGAATGA TGTCATGTAA ATAGAGATAG
ACATAACTAA TATAGGCTGA TAGAG
 
Protein sequence
MSQVFTTSTI PLSFGPQHEP GPKHKLPAAA APDKSPENEP VAESASPIWN CMLAGGFGGM 
VGDTSMHSLD TVKTRQQGYP HNPKYKHMVP AYRTILKEEG FFRGLYGGYT PAILGSFPST
AAFFATYEYT KRRLINEYGI NETMSYFVAG VLGDLASSIF YVPSEVLKTR LQLQGKFNNP
FTKECGYNYK GLINAVSSIA KKEGPSTFVF GYKETLFRDL PFSALQFAFY EKFRQLAIFY
NKSPDLPVSL ELLTGAAAGG LAGTLTTPLD VIKTRIQTAT NTAELSEFSS IKTSNPVVKF
VSKSSTLNAL ASIYKHDGII GAFSGVGPRF IWTGIQSSIM LLLYQVSLKQ LDQILGNNEA
VMDA