| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_77329 |
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| Symbol | SWI1 |
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| ID | 4838595 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009044 |
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| Strand | + |
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| Start bp | 73576 |
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| End bp | 77241 |
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| Gene Length | 3666 bp |
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| Protein Length | 1047 aa |
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| Translation table | 12 |
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| GC content | 42% |
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| IMG OID | 640389910 |
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| Product | component of SWI/SNF global activator complex |
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| Protein accession | XP_001383972 |
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| Protein GI | 150864949 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3064] Membrane protein involved in colicin uptake |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0231889 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGACA ACTTCTGGTT CAATGACTCG GCATTTCCTG CCAAGGATGA CTTCTTGTCC
AACATCTTTG ACCAACCAAA AGATGGCATG GAAGGTAATA GTAGCGGAAA CCTCAGTAGC
AATAATAACA ATGTCAATAA TAGCAACATG AACACCAACA ACAATCTCAG TGGTCTTAGT
AATGCTGGCA ATGTTCCCAA CAGCAATGGA AATGGTGGTC CAGGTGATTT CAACCTCAAC
CAGCTTCTTG GAAACCAGCA ACAGATGTAC GTGAGAAACC AGCAGAACCA GCCCAACCAA
CAGGTTCAGA ACCAAAACCA AAACCAAAGT CAAAACTTCC AGCAGAATCA GACCATGGAC
CAGAATAAGC AGGACCAGTT TATGAGAATG AGACAGCAGA TAATGCAACA ACAAATGATC
CAGCAGAAAC AACAACAGCA ACAACAGCAA CAGCAACAGC AACAGCAACA GCAACAGCAA
CAGCAACAGC AACAGAGCCA ACAGCCCCAC CAGCTGCAAA ACTTCAACTT GATGCTGAAC
ACTTCGTCCA GTTCTGCCAA TGCAGCTGCT GCGTTGAGGA TGAAGAATAT GGAGATTCAA
GACCAGGCTT CTACTGCATC CAGATCTCAG ATTCCTACAC CAATAGCCCA ACAAGGAACG
CCAAGCATGG GCCACAATGT TCCCCATGGC CAACAACCTC AGTTGAGTCA ACACAGTTCG
TTTACTGGAA CTCCTGTCAA CAATATGATG TCACCACAGG TATCGCAGCC TCAACAGCAA
CCTCCTCCTC CACAAGCTCA AAACAGACCT TCTCAAGCTC AATTCCAGAT TCAGATCGAG
ATCTTCCTCA CCACGTTGTA CGACTATATG TCTCGTAGGG GCACACCTAT AGTTCAACCT
CCTATGGTGA ATAACAAGAA GGTGAACTTA TTTTTCTTCC ATCTTATGTC GCAGAAAATG
GGAGGTCCGC AGCTGCTTTT GAAATGGATC CATCAGCCAG TTAACCCTCA ACATCCGCAG
AGCCCTTGGC TCCTCTTTGG TCAGCGTTCG GGCTTATACG ATGGAATTAA TCCGCATGAT
ACTCAAGCCA GAGAAAGGAT TGACAGAGAC ATAGCTAATT GTTACAACAA CTTCTTGTTT
CCCTATGAAC AATACCTCAG TACCCCTGAT GGAAGCAGGG ATATCCAACA GAGAAAGTTG
CAATTTCAAA AACAAATTCT CTACAGATTC CAGCAACAGC AGCAGCTTCA GCAACAACAG
TCTACTCTGT CACCAAATAT GTCCCCTCCA CAGGCTTCTA TTCAATCGCC TGCTATAGTC
AATGTTCCCA CACCTGCTAT TTCACAACAG AGTCCAGTTT TGAGCCAGGC TCCAACACCA
CAGCAGAGAA AACTTTCTAG AGTCAGCAAT CCTTCGAACC AGAACTCACC TAACTTTGCA
AAATCTCCAT ATTTGCAGAA CCAGCAGATT TCTCGCTCTG GAAGCGTAGG TCAGTCTCAA
CTTAGTGGAC ACCCTCAAGG TCCAATCCAA CAGCAAGCGC TTGCACAAAC GCCTGGTCAA
ATTCCACAAC CACCACAGCC TCAGCAGCAG CAGCAGTTCT ACCAGCCAAG ACCAGGGCAA
GCACAACAGC AGAAACCACC AGTCCAGAGC TCAGCACAAC CACAAAACAA AGCCAGACCT
CAACAGCTTC CGCAGAATAC TCAGATGCAA CAAGCCCAGG CTGCTAGAAC ACCAAGCCAG
ATTTCGTCTC CTTCGGAAGC TAAAAGATCT GCTCCAGTTC AACCTAAGTC AGAGAAAGAG
GAAGAGGGCG CCAGCATTAT TAGAAACTAT ATTCCTTACA ACAAGATTGT AGACACCCAT
GGAGGTATCC CTATCAAGGA ATTGTCACAG GTAGCTAGTG AGATTGAGAT TACAAAGTCT
GTATATTTGT TTGCACCTGA ATTGGGTTCT ATAAACTTGC ATGCTCTTGT CATGGGACTC
AAGAATTATT CAAGTGCCAA CAGCGGAGAG GTATTCAACT CTTTGAACTC TCTTCTTGTT
ACAACTTCAG ATGTCAACTA CACCTTCAGA ATAGAAGATT GTATGGAATT GTTAGAAGCC
ATATCTGCTC TAGGATTGAA GATTTTGAAT AACATCATTA CTTCCAATAC TGGGGCACAA
GATCCATTTG TTAACAAGGA TGTCAGAAAA GCACCTACAA ATAACAACAT CGATGCCATA
TTTGAGAAAT ATGCAGGGAA AAGTACTGAG TTTGCTAACG AAGACCTTAG ATTTGTTGTT
AATTCGTTGA CAGGTGAATT AATCGAAGAA GAAGATACTG ATATGGATCT CGACGATTTG
TTCACCGTCG AAGAGAACAA CAGCGACATT TCTCTGGTCT CAACAGCAGA TACAGAAAAC
TCCGAATACC ACTTCAATTT GCCTGATTAT ACGTCGGTCC TCCTTGAATT TAAAAATGAA
AACAAACATC ACTTCAGTAA GATCCAAACC AAGAGTGCAG TGGACGAACA AATAATGTTG
GTTGATCAGT TGATTACTGT CACCATGATT CTTAGAAACA TCTCATTTGC TGATTTCAAC
AAATATGCCA TGGCATCCAA TGGCTCCTTG AAAGACCTCT TGTTTGCCAT TATCAAGAAT
GTGGGATTAT ACCAGGACAA GTTTGTTTTC AATAGGAAGA GACTTTGTTT GTTAAAGGAT
TGTCTTTTAA TCTTAGAAAA TATTTCATTT TTCACTGAAT TGAGAAGCTT GGAAGAAGCA
TTCTTGGCCT TTGCCTTAGT TAGTTCCTTT GGTGATAAAT TGTCTGACCA AGATTATCAA
GTTAAGCAAA TCAACTTGGA GCATCACTCG TACTTGCCAT TTGGTATTGA TGCGTTTACG
AAATTGATGG TTAGGGAGCC TTACAACCGC TCTTTGATCC AGGCCGTTTT GACGGAAACG
TTGACTATTA GTTCTTCAGC TGCCTATGCT AATGCCAAAC CATTTGTAGT TAATAGCAAG
GACCAAGAAG AAACCAGAAA GTTGATCAAC TCCTATTTAC ATGAGAATAA TGCTACTGAA
AGAAAAGGAA AATTGTTGAC TAGAGCTTTC CAATTGTACA TGAGCATAGT TCCATTCGAC
GCCAACAGTT TTGAATTCTC CAAGTTTATT TTCACTAGAG CTCCTACTTT GTCTCAAACA
CTATTCGGAG TAAAGTTGCT TATCGATATG GCGCCTATCG AAGACCTTAG CTTGAGCATC
AACAAAACGA CTCTTTACTG GCTCTTCACG AATAAGGAAG TGATTTTGGC AAATTTGTCC
AGGGTGTCAA TGGCATTAGT TTCCGAAACA GGAAAGTTTG CTAGAGAGTC AAATGAGTAC
AAGATCTTGA TATTGGTGTT ATCTAAAGCG CTTATTTTAA TCAATTCGTT GGTATGCAAT
GTTATTACTG CACGGGAAGT TTTGACTACA ATGGAAGATC CTGAAATATC CAAGGAAATA
GAGTCTTTGG GCGAATATTC GAGAATTATG CCTGACGCCA ACCTGGCCTT TGACACATTT
ATGTCACCAG CTACTGATGC ACACTTGAGC AGAGAAGTCG TGCGTCTTGT TCGCTCTTTG
AGAGAATTGT TTGACCAACA GTATTAGGTC TGTAATACTA TGTAATATAA ATGCACGGAA
CACAAG
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| Protein sequence | MSDNFWFNDS AFPAKDDFLS NIFDQPKDGM EGNSSGNLSS NNNNVNNSNM NTNNNLSGLS
NAGNQQMYVR NQQNQPNQQV QNQNQNQSQN FQQNQTMDQN KQDQFMRMRQ QIMQQQMIQQ
KQQQQQQQQQ QQQQQQQQQQ QQQSQQPHQS QNFNLMSNTS SSSANAAAAM GHNPQQQPPP
PQAQNRPSQA QFQIQIEIFL TTLYDYMSRR GTPIVQPPMV NNKKVNLFFF HLMSQKMGGP
QSLLKWIHQP VNPQHPQSPW LLFGQRSGLY DGINPHDTQA RERIDRDIAN CYNNFLFPYE
QYLSTPDGSR DIQQRKLQFQ KQILYRFQQQ QQLQQQQSTS SPNMSPPQAS IQSPAIVNVP
TPAISQQSPV LSQAPTPQQR KLSRVSNPSN QNSPNFAKSP YLQNQQISRS GSAARTPSQI
SSPSEAKRSA PVQPKSEKEE EGASIIRNYI PYNKIVDTHG GIPIKELSQV ASEIEITKSV
YLFAPELGSI NLHALVMGLK NYSSANSGEV FNSLNSLLVT TSDVNYTFRI EDCMELLEAI
SALGLKILNN IITSNTGAQD PFVNKDVRKA PTNNNIDAIF EKYAGKSTEF ANEDLRFVVN
SLTGELIEEE DTDMDLDDLF TVEENNSDIS SVSTADTENS EYHFNLPDYT SVLLEFKNEN
KHHFSKIQTK SAVDEQIMLV DQLITVTMIL RNISFADFNK YAMASNGSLK DLLFAIIKNV
GLYQDKFVFN RKRLCLLKDC LLILENISFF TELRSLEEAF LAFALVSSFG DKLSDQDYQV
KQINLEHHSY LPFGIDAFTK LMVREPYNRS LIQAVLTETL TISSSAAYAN AKPFVVNSKD
QEETRKLINS YLHENNATER KGKLLTRAFQ LYMSIVPFDA NSFEFSKFIF TRAPTLSQTL
FGVKLLIDMA PIEDLSLSIN KTTLYWLFTN KEVILANLSR VSMALVSETG KFARESNEYK
ILILVLSKAL ILINSLVCNV ITAREVLTTM EDPEISKEIE SLGEYSRIMP DANSAFDTFM
SPATDAHLSR EVVRLVRSLR ELFDQQY
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