| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_65566 |
|---|
| Symbol | |
|---|
| ID | 4838967 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009044 |
|---|
| Strand | + |
|---|
| Start bp | 577096 |
|---|
| End bp | 580307 |
|---|
| Gene Length | 3212 bp |
|---|
| Protein Length | 734 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640390282 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384073 |
|---|
| Protein GI | 150865023 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.445286 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TGTTTTCATC ATCCAACTCC ACCATTTTTT GGTTCACCAG ACAAGTTCCT CCTACAAACA
CCTTCACGAC ACAGCATCCA CCCGCAAATA CTCACACCAT CCTACACTAT AAATCCGCTT
TCTGACTCGC CGCCATGAGT CACCACAGTA CTCCTCATTT GTACACCAAG CGAACTCCAG
GATCGTTGGA AAACCCTGGT TCCAACCCCT TGGCACAGGC TCTTGCCACT AATTCCTCCT
CAAAACAGCA ACAGCAACAG CAACAACAGC CGTCACAACA GAATATCTCT TCATCTGTTT
CTGCTGCCAA TGCTGCCAAT GCCGTTGCTT CTGGTAAACC TACCATGGAT TCTTCTCGTT
CAGTGTCAGA CTCTACGGCT ACCAACGCCA AACAACTCTT AAACGCTTAT GTTTACGATT
TCCTCGTCAA GTCACGTTTG CCGAACACGG CAAGGATATT TGTCAATGAG GCAGAAGTTC
CCTCCGTCCA AAGCAGTGCT ATTGTTGCTG GCTCCAAGCT AGGCTCCCAC CAGCTGTCAC
AAAAGAACCT GCCCCAGATT AACCTGGGCG CCAACACCAA CACAAACACC AACACAAACA
CACCACAGAC GCCAAACCTG TCGTACCAGC AATTCCAGAA GGAAAACAAC TTGCCCAACT
TGCTGGTCGC TGTCGATGCA CCCCAGGGAT TTCTCTTTGA GTGGTGGCAG GTATTCTGGG
ACGTCTTCCA GGCAAAAAAC TCGTTTTCTC CAACTTCTGG ATTCAAGCCA AACAACATCA
ACATCAATGC TGCCAATGCC GCATCGCAAA ATATGGCTTT CCAGTACTAC CAGCTCCAGC
TCATGAAACA AAGACAACAA CAAGAAATAG GTCTTTCTAC CAATGGACAA CCGATGATGT
TTGCACCTAA TGGTGGCAAT GCTAGTATGG CTGGAAATGT CAATATGGCT GGCAATACGA
ATGGCAATCC TATGCTTCAG CAACAACTCA TGTTTCCGCA ACAACAACTA CAAAACCTAC
AACATCCACA GAATCAGCAA CCTCCTCGTT CACTACAACA GCAACAGATT CCTCAACAGG
CCCAACCGGG TACTGGTACG GGAGCTCAAT CACAGGGTCC AGTACAAGCT GGACAGCCAC
AGTTGCTTCC GCCAGGATCA CAAGGAGTAC CACAGACAAT TGAACAGCAA CAGCAACAGC
GACTTGTAAT GCAAATGATG ATGAAACAGC AGCAACAGGC TCAGCAAGCT CAACAACAGC
AGCATCCTTT ACAGCTTCCT ATGGGTGTTA ACCCCATGGA TCCTCTGCAA CAGCAACAAC
AGTTATTGGC AGGTATGGGA CCCAACAACA ATAACAACAG CACCAATAAC AATAACAACA
ATAATAATAT GAACTTACAA CAGCAATTAT TCTTATCACA GCAACAACAA CAGAATCAGA
GTAGAATTCA GCAACATGCT CAGAATCAGA TGAATAGTTT CAGACAACAG GCAGCAGCAG
CTCAACAGGC ACAACAACAA CATGATGGTT CTAACAATAA CTCTCCAGCT AATGGACATA
GATTGAGCCA GATGACACCG CAATCGGATC CTGCCCAGGC TCCACCAATG AATGGAATGA
ATTTTTCACA ACAGCCAAAC ATGATAAACG GGCAAGTACC ACCTCCCTTT GTCCAGCAGC
AACAACAGCA ACAGCAGCAG ATGCGTATGA ATAGTGTTAG CAACGGCAAG AGTGTAGGCA
CCAAGCAGGG AAGTCCCATC ATGCTTGCCG GAGCTGTGGG ACCACAACTG GGCAACAGGA
ATGGAAATGT TAGTGTTCCA GGTAATGTAA ACAACAGCAA TCCCAATCGT AACATGAATG
CTTTACAAGA CTATCAGATG CAGTTGATGT TGTTGGAAAA GCAGAACAAG AAACGTCTTG
ATATTGCCAG AAACAGCGGC GACGTCAACT TGCTTAGTTC CGGACTTATA GGACAAGCAC
AAGCACAACA ACAAGCTGGA CCTGGACCAC AGCAACAAGG TCAACAAGCC CAGCAGCAGC
AGCAGCAGCA GCAGCAGCAG CAGCAGCAGC AGCCGCAGAA TGCTCAAACT AATCGTCTGT
TTACCCAGAA GCCATCACCA GCAACTGCTA GCAGTTCACC TGTGCTACAC AATAAACCTT
CTCCACAGTC TACAACTGCA AAAAGAAAGA AGGAAACTAC TGGTAAGCGA GGTAGAAAGG
CAAGTGCAGC GGGACTCAGT GGAAGCACTC CAGCGATGAA CCCAGCTAAC ACGCCTAGTT
TACTCAAGAA AGAGTACACC ACACCTCTTA CGCCAGCTTC AGAACCAGCT AGTGACCCCA
AGAGAAAACG AAAGAGCACA ACTGGCAACA CTGATTCGCC CAAGAAGCAA GCAACTGCCA
AAACCACGGC AACAGCAGCT TCTACGACCT CAGCGGTAGC AGAAGCCAAA AAGGAAAAGC
CGATTAAGGA AGAAGAAGCC CCTGTTCCGG AGACCAAGAA GAAAGAAGAG TCGGAAATGC
CTCCTCCTAC ATCTTTTTCG GATCCTCTTG GACAGTCCGA CCAAATATTC TCTGTAGAGT
TGCTTGGAAA CGGTAGCACC GATTCACAAA ATTTCTTTGG CGCAAACGCC CAGGGCAACC
AGGGTGGTAT TGACGACATT GACTTTGATT TCGGTCAGTT CTTGGAGAGC AACGGCGATG
GCATTAATGA TGGCATCGGT GGCTTCAACT GGGGCAACGT GGATGCAATT GAAAACGGCG
AGTAGCACTG AAACACACCA CTTCTGAAGC TTTTCTTGCA ACATGAATAT CAGGAACATT
TTCAGAAAAA GAAATCATGA ATATCATGGA TTCTTCATCT AAGAAAATTA TATTATAGTT
GAAAGCTTAA GAATTTACAT TAAAGCTGGA GTTTAAGAAG CCACAAATAT CCTGGAAACA
CTTCTTTAGA GATTGAAACA TTTCTCAGAT TATCAACATG ACATTCTTCA CTATTAGGGC
TCATCCAGAC TGTGTCAAAT GCCTCTAATA TTTTATTCTC ATTGGTTTGT TTTATTTATT
CCTTTATTCT TATTTCTCGA CATATACCTC TTGAGAGTGA CGTTTTCAGG TTCTTTATTT
GTATTGTACT ATTATTCGTT GTTATTGTCG GCTCATTAGT CTATATATAC TATGCGATCT
TCATATTAAT AACATTCCTC GGACTTCGTT AA
|
|---|
| Protein sequence | MSHHSTPHLY TKRTPGSLEN PGSNPLAQAL ATNSSSKQQQ QQQQQPSQQN ISSSVSAANA
ANAVASGKPT MDSSRSVSDS TATNAKQLLN AYVYDFLVKS RLPNTARIFV NEAEVPSVQS
SAIVAGSKLG SHQSSQKNSP QINSGANTNT NTNTNTPQTP NSSYQQFQKE NNLPNLSVAV
DAPQGFLFEW WQYYQLQLMK QRQQQEIGLS TNGQPMMFAP NGGNARSQGV PQTIEQQQQQ
RLVMQMMMKQ QQQAQQAQQQ QHPLQLPMGV NPMDPSQQQQ QLLAGMGPNN NNNSTNNNNN
NNNMNLQQQL FLSQQQQQNQ SRIQQHAQNQ MNSFRQQAAA AQQAQQQHDG SNNNSPANGH
RLSQMTPQSD PAQAPPMNGM NFSQQPNMIN GQVPPPFVQQ QQQQQQQMRM NSVSNGKSVG
TKQGTVGPQS GNRNGNVSVP GNVNNSNPNR NMNALQDYQM QLMLLEKQNK KRLDIARNSG
DVNLLSSGLI GQAQAQQQAG PGPQQQGQQA QQQQQQQQQQ QQQQPQNAQT NPTASSSPVL
HNKPSPQSTT AKRKKETTGK RGRKASAAGL SGSTPAMNPA NTPSLLKKEY TTPLTPASEP
ASDPKRKRKS TTGNTDSPKK QATAKTTATA ASTTSAEEEA PVPETKKKEE SEMPPPTSFS
DPLGQSDQIF SVELLGNGST DSQNFFGANA QGNQGGIDDI DFDFGQFLES NGDGINDGIG
GFNWGNVDAI ENGE
|
|---|
| |