| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_59543 |
|---|
| Symbol | VSP33 |
|---|
| ID | 4838814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009044 |
|---|
| Strand | + |
|---|
| Start bp | 372621 |
|---|
| End bp | 374744 |
|---|
| Gene Length | 2124 bp |
|---|
| Protein Length | 707 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640390129 |
|---|
| Product | Vacuolar sorting protein VPS33/slp1 (Sec1 family) |
|---|
| Protein accession | XP_001384027 |
|---|
| Protein GI | 150864989 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5158] Proteins involved in synaptic transmission and general secretion, Sec1 family |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0683102 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATACA CGCCTTCGGA TGATCTTGGG CTCGCATTGG ATGAATTCAA TAGCAAATCG
CTCGAGAATC TCCTCCAGCT TCTAGCCAAG ATCTACACTT CCAACAACTT GCTAGTCCTA
GACCAGAGTC TCTCACCATT TCTCAATAGT CTCACAACTT TCCTGAAGCT AAAGGAGCAA
GGCAAGTTCA GCAACATCAT CTGGCTTAAC AACGAGCTTC TATCGCATGA TCTCGACGTT
TTCAGAAAGT TTGCCGGGTT AATCATCTTA GTTCAAGAAA CAGAAGACAA TCGCAGTTTG
ATAGAGCAAT TGCTCGTTTC TAACCTCGCT GTGTTAGACA AAATTCATGG TCTTAAAGTT
AACATAATAG TTAAGGACTT ATCCCGTTCT TATCTATACG AGTTGAACAA ATCGTTTGGC
GGAAACGTCG TCAACTTCGA TCTGATTCTT AGTCACGATC TCAAATCGAA ACCTGTAACA
AGTATATCAC CCCGTATCAA GGTGCTAAAC TGGGAAACAT TACCTGTCTA TAATGACGAC
ATCATTGTGG TCGATGTAGG TAAATACGGC GGTATAGATT CGTACTTCGA CGAGCCGTTG
AAACAGGTGA ATCAACTTGT AGAAGCGCTA GTTCAAATTC TTTTCGCCAG TCATGGAAGT
AAGAATAATG TACTCAAATT GAGGAACATC TACGGAAAAG GCAACCATGC TGATTTCCTA
GTCCAGCTAC TTCAAGACGT TAAGATTCCT GAGTATCTCA ATACCAACTT GAACCAACTA
GAGATCGAGT TCTACCGTAC AAAATTGCTC AGTAATACTG ATTTGGTAGT TCTTGAAAGA
AACTTGGACT TCTATTCAGT TCTCTTTAAC CAGTTAAACT ACCAGGGTTT GATCGACGAC
TTGTTTGAGT TGAAGTTCAA CACCATAACA AATCCAGTAG GTGATTCTCT GGCTTACAGT
AATCTATCCA ATGATGTTCT TTATTCCGAC TCGTTGAGAC ATTTGAACTT TGCATCAATA
GGACCAGAAT TGAATAAGCT AGCCAAAGAG ATTCAGCAAC AGTTCAAGTT GAAAGACACG
GAGAACGATA CGTTAAACTC AAACTTACAG GATATACGTA AAATAGTCCA GAACTTGGGA
ACTTTGACGC AACAGCAAGA TCTCATTAAA AAACACACCT CGATCAGCGA GTCTATTCTC
GAGAGAATCA ACTCTGAGTA CGAAACTTTT CTTACGTTCC AGAATGATAT CTTTGAAATG
GATTACAAAT TGCAATTGTC CAAACTAAAG TACTTCTTCA ATATCAACTT TAACCAGTAT
ATAATTCTCA CCACTATCGT CTTGGTGTCG ATTACTAACA ATGGTATTAA AGAGCGAGAC
TTTGACTGGA TCTCCCAGGA AGTGTTGGAT AGCTATGGAA TTTCTACTAG TTTGGCTCTT
GAAAAATTGG TCGAATACAA AATGATAAGA ATCAACGTCG ATTATGGGAA CGACTTCTTG
AGCACAATCA CAGGTGGTTT GGCCAGTAAC CAACAGACAA CACCTGTTCC GGACGAGAAC
CAAAGTCTTG CCAACTTGGG AATTACTGGT GCTCAGGATA CATACAGAGC GAACTTTACC
TTGATAGACA AGTTCTGGAA TCTACATCCT TTGGAAGAGG AAGAAGAAAA AGGAGAGGAG
CCAGTACAGC ATCCAGACTC CAAAGACCTT TTGGTGGATT TGTATCCGAA TCCATCCTTT
ACTTTGCCTT CTAACACGGT TCCGTTGTTA ACACGATTGG TAGAGGCTCT CTATCTTCGG
GACTTCTTGA AGTATAAACC AGTGAACAAC ATCAAGAAGC GTCCCAACTG GGACAACCTA
TCTACGAGCA CTATGTTCAA TGGCAAAACG GTGGATATCA ACATTGACGA TACTCTGGAT
GTGAGAACCA CCAAGCCGTC ACCGTTGGCT ACACACCAAG AGTACATTGT TGTTGTAGTA
ATAGGTGGAA TCACCAGAAG CGAAATCAGT TGTTTGAAGT ATCTACAGCA AAGGCTTGTC
AAGAACAAAA AGAACAAGAA AATCGTTGTA GTTTCCAGTG GAATCGTCAA CAACAGGAAG
CTTCTCGATT TCTTTTTAGA CTAG
|
|---|
| Protein sequence | MSYTPSDDLG LALDEFNSKS LENLLQLLAK IYTSNNLLVL DQSLSPFLNS LTTFSKLKEQ
GKFSNIIWLN NELLSHDLDV FRKFAGLIIL VQETEDNRSL IEQLLVSNLA VLDKIHGLKV
NIIVKDLSRS YLYELNKSFG GNVVNFDSIL SHDLKSKPVT SISPRIKVLN WETLPVYNDD
IIVVDVGKYG GIDSYFDEPL KQVNQLVEAL VQILFASHGS KNNVLKLRNI YGKGNHADFL
VQLLQDVKIP EYLNTNLNQL EIEFYRTKLL SNTDLVVLER NLDFYSVLFN QLNYQGLIDD
LFELKFNTIT NPVGDSSAYS NLSNDVLYSD SLRHLNFASI GPELNKLAKE IQQQFKLKDT
ENDTLNSNLQ DIRKIVQNLG TLTQQQDLIK KHTSISESIL ERINSEYETF LTFQNDIFEM
DYKLQLSKLK YFFNINFNQY IILTTIVLVS ITNNGIKERD FDWISQEVLD SYGISTSLAL
EKLVEYKMIR INVDYGNDFL STITGGLASN QQTTPVPDEN QSLANLGITG AQDTYRANFT
LIDKFWNLHP LEEEEEKGEE PVQHPDSKDL LVDLYPNPSF TLPSNTVPLL TRLVEALYLR
DFLKYKPVNN IKKRPNWDNL STSTMFNGKT VDINIDDTSD VRTTKPSPLA THQEYIVVVV
IGGITRSEIS CLKYLQQRLV KNKKNKKIVV VSSGIVNNRK LLDFFLD
|
|---|
| |