| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_59143 |
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| Symbol | CDR4.2 |
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| ID | 4838764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009044 |
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| Strand | - |
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| Start bp | 1788626 |
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| End bp | 1793056 |
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| Gene Length | 4431 bp |
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| Protein Length | 1476 aa |
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| Translation table | 12 |
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| GC content | 39% |
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| IMG OID | 640390079 |
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| Product | ABC transporter |
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| Protein accession | XP_001384655 |
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| Protein GI | 150865438 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
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| TIGRFAM ID | [TIGR00956] Pleiotropic Drug Resistance (PDR) Family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.233353 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTACAC CTACAATGAC CGACGATAGC TCGCAAGAGG CGCATGCTTC CGATAGAACT
GAATTCAATC AATATGATGG TTTCAATCAG GTGGTCGAGA ACGAGATAAG GGAACTAGCA
AGAAATCCAA GCAGGATATC TGTGGACACT GCAAGTTTAC ACTCCTCCAG CTTGGCTTTG
GTCAGAACTT TAACAAACGC TTCACAAATA CCAGGACAGA ATCCAATGGT TGAGAATTCA
TCTGAGTACA TTGATCCAAG ACTTGATCCC TGCTCCGAAC AATTCGATTC CAAATTCTGG
GTCCAGAATT TAAGAAAACT TGTTCTATCA GATGCTGAAT ACTACAAACC AGCTTCTTTG
GGACTAGCGT ACAAGAATCT TAGAGCTTAC GGTCTTGATG TCGATACCGA TTATCAAACT
ACATTTGGCA ATGGTATCTT TAAAATGCTC AATAGATATG CCAGACGAAT AACTGGAAAA
GAGTCTTCTT ATGACATTCT CAAGCCTATG GATGGGATTC TTTTACCTGG CGAATTAACT
GTTGTGCTTG GTAGACCAGG TGCCGGTTGT ACAACACTTT TGAAAACGCT TTCAACACAA
ACATATGGTT TCCAAGTTGA TAAGGAAAGT ATAATCCTGT ACGACGGTTT CACCCCATCA
GACATCAAGA AACACTATCG TGGAGACGTC GTTTATTGTT CAGAAACAGA AAAACATTTT
CCACACTTGA CAGTTTGGGA TACTCTATAC TTGGCCGCTA AGTTGAGAAC GCCACAAAAC
AGGCCACTAG GTGTATCGAG GGAACTATAT GCAAACCACA TGACAGAAGT TGTTTTGGCA
ACTTACGGTT TGACTAATAC GAAGTATACT AAAGTTGGTG ATGATTTTGT GAGGGGTGTA
TCTGGAGGGG AAAGAAAAAG AGTTTCCATT GCCGAAGTTG CTTTGAATCT GGCATTGATT
CAATGTTGGG ATAATTCCAC TAGAGGCTTG GATGCTGCAA CAGCGTTGGA ATTTGTTAGA
GCTTTGAAAG CATCAGCTCA AGTTTCCAAA GCAACGCCCC TTGTTGCAAT TTACCAATGT
TCTCAGGATG GTTATGACTT ATTTGATAAG GTGATATTGA TGTACGAAGG CTATCAAATT
TTCTTCGGTA ACGCCAAAAA GGCAAAACAG TATTTCATAG ACATGGGTTA TGAGTGTCCC
CAAAGGCAAA CTACGGCAGA CTTTTTGACT TCTTTGACTA ATCCTGCTGA GAGGATTCCA
AGGAAGGGTT ATGAAGCACA AGTTCCACGT ACTCCTGAAG AATTCTATAA TTATTGGCAG
AAGTCACCTC AAAGGCAAGA ATTATTATCT CAAATTGATA GCTACTTGAA TGAGCATCTT
GAGTCTAATT CCAGGAGTGA GTTTCATGAG TCTCATATCG CAAAGCAAGC AAGGCACACT
AATCCTGGAT CATCTTATAC TGTGTCATTC TTAATGCAAG TAAGGTATGT TGTCGAAAGA
AATATATTAA GAACCAAGGG TGATCCCTCA TTCATGCTTT TCCAAATTGG AGGTAACATA
TTCATAGCAT TTATTTTGTG TTCCATCTTC TACAATCTTC AACCCACCAC AGAATCATTC
TACAGCAGAA CGGCTGCTAT GTTTTTTGCA ATTTTGTTCA ATGCTAACTC ATCAATGTTA
GAAATATTTT CTCTTTATGA GGCCAGAAGC GTTGTCGAAA AGCACAAGAC ATATGCATTA
TATCATCCTG CTGCCGATGC GATTGGTTCT ATAATAACAG AACTTCCAAC CAAAATTATC
ACTTGTATTG GGTTTAACTT GGTTTACTAC TTCATGATCC ACTTTAGAAG AGAACCAGGA
CATTTCTTTT TCTATTTGCT AGTGAACTTC ACTGCAACAC TCGCGATGTC TCACTTATTC
AGAAGCATTG GAGCTTCGAC TAAAACAATG TCTCAAGCTA TGACCCCTTC AGTTATTCTA
TTGCTTGCTT TTGTCATCTT TACCGGTTTT ATCATTCCAA CTCCAGATAT GCATGGTTGG
TGCAGATGGA TCAATTACAT TAATCCGATT GCATATGCTT TTGAGGCTTT GATTGCTAAT
GAATTTCATG ACAGGGATTT CATATGCTCT CGATTTGTAC CTTCTGGTGG TAGCTACCCA
GTTGATGGTC CATATCGGAT TTGCAGTGTC GTTGGATCTG TCGTTGGTGA AAATTATGTG
AATGGGGATG CCTTCATCAA CGAGTCTTTC AAGTATTATG ATGGTCACAA ATGGAGAAAT
TGGGGAATTG TTCTTGCATT TGCAATTTTC TTTATGTTCA CTTATGTTCT TATTTGTGAG
TATAATAGGG GATCAAGGCA GAAAGGAGAA GTACTTCTAT TCCAGAAACG TTTATCAAAA
AGAAAGATGG ATATGGAGAT GGGAAAAATG GTGAAGTATA CCCATGAGTT CAGCAGTGAT
TCGAGTTTTG AGAAAAATTC AAAACATGAA TACAGTGGTA ATATATTCCA TTGGAGACAT
TTATCATACT CAGTGAAAAT TAAATCTGAA AATAGGATCA TTTTGGATGA TATAGATGGC
TGGGTTAAGC CTGGACAGAT AACTGCTTTG ATGGGAGCGA CAGGTGCTGG TAAAACTACA
CTTTTGAATG CGATATCTGA TAGATTGACT GCTGGAGTTG TCACTGATGG TGTAAGAATG
GTAAACGGAA GACCATTGGA TGCCGATTTC CAGAGATCTG TTGGTTACGT CCAACAACAA
GATCTACATT TGGAGACATC CACCGTGAAA GAAGCTTTAA AATTTTCAGC TTATTTGAGA
CAGCCATATG CTGTATCCAA AAAGGAGAAA GATGAATATG TCGACTACGT CATTAATCTT
TTGGATATGG AACTGTATTC AGACGCAGTT GTTGGTATAT CTGGCGAAGG CCTTAATGTC
GAGCAAAGAA AGAGACTTTC AATTGGTGTC GAGTTAGTTG CCAAACCAAA ATTATTGCTA
TTTCTAGATG AACCTACCTC TGGATTAGAT TCACAAACAG CTTGGTCTAT TTGCAAGTTG
ATTAGAAAAT TGGCAGATAG TGGTCAGGCT ATTGTTTGTA CTATCCATCA ACCTTCAGCC
ATATTATTGA AAGAATTTGA TCGTTTACTT TTCTTACAAA AAGGTGGCCA AACAGTATAT
TTTGGTGATT TGGGGGACTA TTTTAATACT TTGATTCAAT ACTTCGAAAA ACACGGTGCT
CATAAATGTC CTCCGGAAGC TAATCCAGCT GAGTGGATGT TGGAAGTAAT TGGTGCAGCA
CCTGGTTCTC ATTCAAAGAA AGACTATGCC AAGGTTTGGA AAGATTCAGA AGAGTATAAA
CAGATACAGA GAGAGTTAGA TGAAATGGAA AGAGAGCTTG TAAAGCTACC AGTTAATGAT
GATCCAGAAA AGTTGAAAAC ATTTACAAAT CCAATGTGGA AACAATATGT TTTAGTTACT
GAAAGAGTCC TTCAACAGTA TTGGCGAACA CCAAGTTATA CTTATAATAA GGTTACCTTA
TCTGTACTCT CCTCCTTATT TAATGGTTTT GCTTTCTTCA AGGCAGACAG ATCACTTCAA
GGACTTCAAA ATCAAATGTT TTCGGTTTTC ATGTTTTTGG TCAATTTGAT GACGTTAGTA
CAACAGTATT TGCCTCATTT TGTTGCTCAA AGAGATCTAT ATGAAGTCAG AGAAAGACCA
TCAAGAACTT TCAGCTGGTT TGCTTTTATT GCTGCCCAGA TAACATCTGA GGTTCCATGG
AATATTTTCT GTGGTACCTT ATCCTTTCTT TCTTGGTATT ATCCAGTAGG GTTTTACCAG
AATGCCGTTG AGACCAATAC AGTCCATCAA CGTGGTGGAT ATATGTGGTT TGCTATTGTT
ATGTTCTACG TTTACTCCTC AACTATGGGC CAGATGTGTA TGTCATTCAT GGAACTAGCA
GATAACGCAA CCAACTTGTG CATCATCATG TACAGTATGT GTCTTGGTTT CTGTGGTGTG
TTGGTTACTA AACAGAATTT GCCTGGATTT TGGATATTCA TGTACAGAGC AAATCCATTC
ACTTACTTAG TTTCTGTCAT TTTGTCAACC GGGTTATTTG ATACCAAAGT TACTTGCTCT
CCTACAGAGA TTCTCAACAT TCCTGTTCCT CAGGGTTATA CATGTGAGCA ATTTATGGGA
CCATACATGA GTGTTGCAGG TGGATATTTG CAAAGCAATG GCGGGCAATG TCAATTCTGC
ACCATGGCTA ACACCAATGT ATTCCTCAAC CTGATAAATG CTGATTACTA TACGAGATAC
AGAGATATGG GCCTTTTTGT TGCATTTATT GGTATTAATG TTATTTGCAC AGTTTTCTTT
TACTGGCTTG CCAGAGTCCC AAAATTCAAC AGAAGAGGAA CTAAGACTTA G
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| Protein sequence | MSTPTMTDDS SQEAHASDRT EFNQYDGFNQ VVENEIRELA RNPSRISVDT ASLHSSSLAL
VRTLTNASQI PGQNPMVENS SEYIDPRLDP CSEQFDSKFW VQNLRKLVLS DAEYYKPASL
GLAYKNLRAY GLDVDTDYQT TFGNGIFKML NRYARRITGK ESSYDILKPM DGILLPGELT
VVLGRPGAGC TTLLKTLSTQ TYGFQVDKES IISYDGFTPS DIKKHYRGDV VYCSETEKHF
PHLTVWDTLY LAAKLRTPQN RPLGVSRELY ANHMTEVVLA TYGLTNTKYT KVGDDFVRGV
SGGERKRVSI AEVALNSALI QCWDNSTRGL DAATALEFVR ALKASAQVSK ATPLVAIYQC
SQDGYDLFDK VILMYEGYQI FFGNAKKAKQ YFIDMGYECP QRQTTADFLT SLTNPAERIP
RKGYEAQVPR TPEEFYNYWQ KSPQRQELLS QIDSYLNEHL ESNSRSEFHE SHIAKQARHT
NPGSSYTVSF LMQVRYVVER NILRTKGDPS FMLFQIGGNI FIAFILCSIF YNLQPTTESF
YSRTAAMFFA ILFNANSSML EIFSLYEARS VVEKHKTYAL YHPAADAIGS IITELPTKII
TCIGFNLVYY FMIHFRREPG HFFFYLLVNF TATLAMSHLF RSIGASTKTM SQAMTPSVIL
LLAFVIFTGF IIPTPDMHGW CRWINYINPI AYAFEALIAN EFHDRDFICS RFVPSGGSYP
VDGPYRICSV VGSVVGENYV NGDAFINESF KYYDGHKWRN WGIVLAFAIF FMFTYVLICE
YNRGSRQKGE VLLFQKRLSK RKMDMEMGKM VKYTHEFSSD SSFEKNSKHE YSGNIFHWRH
LSYSVKIKSE NRIILDDIDG WVKPGQITAL MGATGAGKTT LLNAISDRLT AGVVTDGVRM
VNGRPLDADF QRSVGYVQQQ DLHLETSTVK EALKFSAYLR QPYAVSKKEK DEYVDYVINL
LDMESYSDAV VGISGEGLNV EQRKRLSIGV ELVAKPKLLL FLDEPTSGLD SQTAWSICKL
IRKLADSGQA IVCTIHQPSA ILLKEFDRLL FLQKGGQTVY FGDLGDYFNT LIQYFEKHGA
HKCPPEANPA EWMLEVIGAA PGSHSKKDYA KVWKDSEEYK QIQRELDEME RELVKLPVND
DPEKLKTFTN PMWKQYVLVT ERVLQQYWRT PSYTYNKVTL SVLSSLFNGF AFFKADRSLQ
GLQNQMFSVF MFLVNLMTLV QQYLPHFVAQ RDLYEVRERP SRTFSWFAFI AAQITSEVPW
NIFCGTLSFL SWYYPVGFYQ NAVETNTVHQ RGGYMWFAIV MFYVYSSTMG QMCMSFMELA
DNATNLCIIM YSMCLGFCGV LVTKQNLPGF WIFMYRANPF TYLVSVILST GLFDTKVTCS
PTEILNIPVP QGYTCEQFMG PYMSVAGGYL QSNGGQCQFC TMANTNVFLN SINADYYTRY
RDMGLFVAFI GINVICTVFF YWLARVPKFN RRGTKT
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