| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_44822 |
|---|
| Symbol | |
|---|
| ID | 4838782 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009044 |
|---|
| Strand | + |
|---|
| Start bp | 1604386 |
|---|
| End bp | 1607592 |
|---|
| Gene Length | 3207 bp |
|---|
| Protein Length | 1068 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640390097 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384262 |
|---|
| Protein GI | 150865160 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[Z] Cytoskeleton |
|---|
| COG ID | [COG5234] Beta-tubulin folding cofactor D |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0357754 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGACT CGGCTGAACG AGATATACTC AAACGAAACG ACCGTCTCCA TAAAGACATC
AGCTCTTCTA TAGATTCGCT CGTAGAAATC GCCAGAAATT CACTGCTCAC GGATCACGAT
AAGAAAGATG CCTCAACTGT GACTTTTCAG AGACTCAAAT TGTGGATTAA TGAGTTCGAG
CCCTCGCCTA AGTTGCTTGA TATCCATTTG GCCGAGTATA TTGACAAGTT AACAACGTTG
TTCTTATGGC TATTTCGTCA TTCGCACCAT TCCAGCGACT TGACTAAAGG AATAGGTGCA
ACCATCTATG AATTGTCCAA GATCAGAGGG TTCAAGTTTG TAACCAATTT CTTCTCCAGT
GATTTATACC TTGTAGGCAC TCTTATTGAT ATCGTGTCCA CGCTTGAGAA TGATAACGAG
AAGTTTCTTG GTCTCATATG GCTCTCAAAC TTGGTTCTAG TGCCGTTTCG TCTACTTGAA
ATCGACTCTG AAATGGTTGC CAGAGTTTTG CAATTGGCCA TTACCAACTT GAAATTGCAT
TCAAATGCTT CAAAGAACCA ACTTGTAGCA CTGATCTTGC TTTCACGTCT AGTGACTAGA
TCAGATACCC CGATATCTCT CAGACACTAC ATGCTTGATG TAGTGGAACC GGAGTGGCAG
GAGACTGGAA AACTTCATAA CGAATCTGTA AAACTCGGTC ACCTAATGAC AATTAATAAG
ATCCTCAAGA GACCAGAGTC GGACTTGTAT GAACCATACT TGCCCCTCAT TTACGAATTG
GTCTGTATAG ATTTGCTAGC CTTAAGACAA GCTCCAGACT CTGTCAACAA CCTCAATATC
ACCTATTTAA TCAAAATACT CAGCAAATTA TCCAAATTCT ATATTCATCG AGACAACTAT
GATATGGTAG CAGCAGTGAT TAATAACTTG TTGCATGATA TTATGGACGT ACTTATCAAT
AAGTTTGATA CTAATAATCG ATATGCCATG GCGAAGGCAC TCGGCCATCT TAGTCTTAGC
CTTTCGCATC CAGCAATCAA CTACCAGCAC CAATTAATAA TACATTTGAT TAAGCAACTA
GAATTGCCTT TGCAAATGGA CACCTTTTCA TCTCAAATGG AGATTAACTC AGACAATATT
TTCATTCCCA AATACCATAC AATTTTACTA TTCTTAGGCT ATATTGCCCT CAACAAGTCG
ATGCCGCTAG AATTCGTAAA TGTGGTGCTT ACCATTGTCC ACAAGACGCT CTTTATTCGA
CAATATCGTC TTACATCAGT TGTTGGAACT CAATTGCGAG ACACATCTTG CTTCGTTATT
TGGGCCATAA GTCGAATGCT TAAACCTGCA AATCTTGTAC CTAAAGATGC AAGCAAAATG
ATGGAAACAA TATTTGTAGA TTTGGTTAAA GTATCAGTTT TTGATGAAGA ACTTCTAATT
AGAAGGTGTG GAATGGCAGT CCTCCAGGAG TATGTGGGAA GATTTGGTTC AATCTTGTAT
CAGTATCTGT CCGGAGAAGA GCGAGGGAAT CGTATAGTTT CCTTCATTCA GCTATTCAAT
AGCCAAAGTA TCAAAACTAT ACGTCTGTCT TATGAAATCA TCCTACAATT ACTTGAGCAA
CAGTTTGATA GAAATATATT TATTGGTGAA CTATTACAAA ATTCAACAGA CGATTCTAAG
TCGTATGAGG TTAGAAAACT TAGCGCAACC TACCTAAGAA AAGTTTTAGC CTGCAAACAG
AAGAATGTGA TCATTGGTTC TGATCTGTTT CCTGATTACG GTGTATTTGA TTTCGTAACA
CGATTCATAG AGTGTGGAAA TCTCACTGCT GCTTGTGAAG TGCTTGACAA AATCGATGTT
AAACGTGTTG AGCATAAATT GGTAGAGTTG AATAGTCTGT TTTCTTTTGA CTTCCACAGA
GACAGTATCG AAAAGGCTAT AGGCTACCTC AGACTTCTTA GTAAGTTAGT TGAAGGTTGT
AATTACAAGT TCCAGGAATC GGACTGGACA AACCTACTCG ATATTTCCCG AGTCAGGAAT
AAGCACGAGG AATTAATACC TCTATTCAAA GAGGTTATCC AGGTTCATCA TGCTACCCCA
GATTCAATAG CATTAAAGAT GAGAGATTTG ATCAAGAGCA ATAATCTAAT TTTGTCCAGA
ACGACTTTAC ATGACTCTTC ACTTCTGAAG TCTCTGTTCG AGACGATATT CGAATTAGTG
TATGACACGT CTGTCGACTG TGAAATTCGG GCAAACATGG TTTCTTCTCT TGATTTCTTT
GTCGACACTC CAGAATTCTT TGACGATATT AGGGTGGAAA ACTTGCTTCA TTTGCTTGAT
GATTATACAA TAACGAACCA GGGAGACGTC GGTTCCAAAG TTAGATTAGC AACCCTTGGC
GTGATCAAGC AGAACTTCAG CATGTTCGTG AAAAAAGAAG ATATCTTGAT GGGAAAATTG
TTGAGATTGT CAGGTGAGTT GATTGATAAG ATCAGAATTA GTTCCTTTGA GTTATTTCTT
CGGGGAATGA ATATCCAGCA TCCCATGAAT GCTAATAACG ACATCGGAAA ATACTATTCA
AGTTTGTTTA CTGTGTACCT CTCAAACCCA AGGGTGAGTA CATGGGCGAA TTCCTTCTGG
AAAGGAGTCT GTTATAGTAT TGGAGCTACA GCTGCTAACC GTTCAGTAAT TAACGAATCT
TTTCACCAAT TGCTAAAGTA CTTGGAGTCT GGTGATAGAT GCCAAGATTT AAAGGAAGTG
CTACTATTAC TAAATACCAC TACAAGCGTA CTGGACAGGC AGTCAAAGGG CTGGGTACTG
GTACTCAATG TGTTTGTCAA GCTCTTTGAG TGTAACTATA GGTTCCCCTC TGATTTCCCA
TTCGAGTCTT TGTATGTGAA GTGCTACAAT TTGCATATCA ACACCAAGAA CTCAGCCAGA
ATCGGAGCAG TGATGAGAAT TTTTCTTTAT TTGATATTGC TGGATCAAGT TGACTCAAAC
TTGAAGCTGA AGGTGACGGC TAGATTGTTG TGGATATGTT GCAACCACAG GTTTGAAGGA
ACCAGAGAAT TAGGAAGTAG CTTGATTTTT GAACTTGCCA ATGAGATCAT GAGTGAAGAA
GCCATGGAAT ACATTTCTGC AATTGACTGG AAGCAACTGC CGGCGAAACT AAAGATTCAC
ATCACGGATT TACAAAGATT TTTTTGA
|
|---|
| Protein sequence | MDDSAERDIL KRNDRLHKDI SSSIDSLVEI ARNSSLTDHD KKDASTVTFQ RLKLWINEFE
PSPKLLDIHL AEYIDKLTTL FLWLFRHSHH SSDLTKGIGA TIYELSKIRG FKFVTNFFSS
DLYLVGTLID IVSTLENDNE KFLGLIWLSN LVLVPFRLLE IDSEMVARVL QLAITNLKLH
SNASKNQLVA SILLSRLVTR SDTPISLRHY MLDVVEPEWQ ETGKLHNESV KLGHLMTINK
ILKRPESDLY EPYLPLIYEL VCIDLLALRQ APDSVNNLNI TYLIKILSKL SKFYIHRDNY
DMVAAVINNL LHDIMDVLIN KFDTNNRYAM AKALGHLSLS LSHPAINYQH QLIIHLIKQL
ELPLQMDTFS SQMEINSDNI FIPKYHTILL FLGYIALNKS MPLEFVNVVL TIVHKTLFIR
QYRLTSVVGT QLRDTSCFVI WAISRMLKPA NLVPKDASKM METIFVDLVK VSVFDEELLI
RRCGMAVLQE YVGRFGSILY QYSSGEERGN RIVSFIQLFN SQSIKTIRSS YEIILQLLEQ
QFDRNIFIGE LLQNSTDDSK SYEVRKLSAT YLRKVLACKQ KNVIIGSDSF PDYGVFDFVT
RFIECGNLTA ACEVLDKIDV KRVEHKLVEL NSSFSFDFHR DSIEKAIGYL RLLSKLVEGC
NYKFQESDWT NLLDISRVRN KHEELIPLFK EVIQVHHATP DSIALKMRDL IKSNNLILSR
TTLHDSSLSK SSFETIFELV YDTSVDCEIR ANMVSSLDFF VDTPEFFDDI RVENLLHLLD
DYTITNQGDV GSKVRLATLG VIKQNFSMFV KKEDILMGKL LRLSGELIDK IRISSFELFL
RGMNIQHPMN ANNDIGKYYS SLFTVYLSNP RVSTWANSFW KGVCYSIGAT AANRSVINES
FHQLLKYLES GDRCQDLKEV LLLLNTTTSV SDRQSKGWVS VLNVFVKLFE CNYRFPSDFP
FESLYVKCYN LHINTKNSAR IGAVMRIFLY LILSDQVDSN LKSKVTARLL WICCNHRFEG
TRELGSSLIF ELANEIMSEE AMEYISAIDW KQSPAKLKIH ITDLQRFF
|
|---|
| |