| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_35732 |
|---|
| Symbol | XYN1 |
|---|
| ID | 4838973 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009044 |
|---|
| Strand | - |
|---|
| Start bp | 26375 |
|---|
| End bp | 28047 |
|---|
| Gene Length | 1673 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 37% |
|---|
| IMG OID | 640390288 |
|---|
| Product | Glycoside hydrolase, family 10 Endo-1,4-beta-xylanase precursor (Xylanase) Exoglucanase/xylanase precursor |
|---|
| Protein accession | XP_001384299 |
|---|
| Protein GI | 126135550 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3693] Beta-1,4-xylanase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACTTTG GCACTGCTAC CAACCAGGAG CAATGGTCTA ACAAAGAATA CACTGAGTTA
ATGCTCGAAC AATTCGGTTC TATGACTCCT GCAAATGTTC AAAAGTGGAT GTACACTGAA
CCGGAACAAG GCGTCTTTAA TTACACTGCT GGTGATGAAT TCGCTAACTA CGCATTGAAG
AACAAGAAAG TTCTTTTGTG TGATACTCTT GTTTGGCATC AACAGTATCC TTCTTGGTTA
GATGAAAAGA CATGGACCAA GAAGGATTTG CTTAATGTAA TTTATCAACA CGTCTATAAT
GAAGTGAAAC ACTTCAAGGG TAGATGTTTT TCTTGGAATG TTGTCAACGA AGCTTTGAAC
GAAGATGGAA CTTGGAGACA ATCACTCTTC TACAACGTTA CTGGTACTGA TTACATTGAA
ACTGCTTTCC TTGCTGCTTC TGCCGCCGAT CCAAGAGCTC AACTTTACTA CAATGATTAC
AATATCGAAT ATCCAGGTCC AAAGTCAGCT GCAGTAGAGA ATATGGTCAA ATGGCTTAGG
AGCAAGCACG TGAAAATCGA TGCTGTTGGT CTTGAATCTC ATTTCATTGT TGGACAGGCA
GCAACTGAAG CTCAGCAGCA GCAGCAGATG CAATCATACA TTGATTTGGG TGTTCAAGTT
GTTGTTTCGG AACTCGATGT TAGATTTGAA ACTCTACCAC CTACTGAAGC TGGTCTTGCT
CAACAAACTG TTGACTACCA AGCCTCTATT AACGCTTGTA TTAAGGTAGG AAAGCAATGT
ATGGGTATCT CGGTTTGGGA CTTTGATGAT GAGTACTCGT GGATTCCAAG TTCCTTTGCT
GGTCAAGGTG ATGCTGATTT GTGGTACGCA AACTTTACTA CAACTCCAGC TTACACTGGA
GTTGTTTCTG CCCTTGAAGC AGGTGCTCTT AAGAAGCACA TCTTTTAAAA GTTCTTGGAT
ATATCCTGGT TCACTTTTTT ATTTTGATAT ATCAGATTAC ATTTCGTTGC CAAGAGTACC
TAGTGCCATT TCTACTGGGC TTCTTTTCTG TTCACTGGAG TATGAAATGT TCATATAAGT
CCTAGTTATT ATTTCATATA TAGGAGAACT TTCAGATTCA TAGAATTTAA ATACAATTTT
TCTTATGTTA TTATTATTAT TATTATTATT ATTATTATTA TTATTATTAT TATAATTATT
ATTATCTGCA ATTTCTATTC AGTTTGGCAA AGTTATTAAT AACTACTTTC CCCAATTGAA
AATGTAAACC ACCATTCTTG TGGTTTCAGC TATAACAGGG AGTGTATCTA TTATGGAATG
TGTTTGAAGT AGACAACACG ATACATAAAT TTCTTGCAGA TTCTAAGGTT GACGCGTTTG
AGGCGTCTCT TAAATACTCT AGGATTAATA TCCACGTGTT ATCTTCTGAC CAAGGACCAT
GTGCCCATAT TTCAAATGTT TATGATTTGT GTATTAAGAT TTTGTAAGAC TCAAAGATGA
AGACATGATT ACTTGAATGA GGGCAATGGA ATAGTACTTT TGGAGCAGGT GTAATTTTTT
GCAGCAATTC TTTATTTTGT AGTATTTTTC GCATTCTTTC CAGAGAGACA GTTAGTCCGT
ATTGTTCAGG AATTGAGAAG GGTTACAAAA GCAAGGAAAA GTTAAGATTG TAA
|
|---|
| Protein sequence | MYFGTATNQE QWSNKEYTEL MLEQFGSMTP ANVQKWMYTE PEQGVFNYTA GDEFANYALK
NKKVLLCDTL VWHQQYPSWL DEKTWTKKDL LNVIYQHVYN EVKHFKGRCF SWNVVNEALN
EDGTWRQSLF YNVTGTDYIE TAFLAASAAD PRAQLYYNDY NIEYPGPKSA AVENMVKWLR
SKHVKIDAVG LESHFIVGQA ATEAQQQQQM QSYIDLGVQV VVSELDVRFE TLPPTEAGLA
QQTVDYQASI NACIKVGKQC MGISVWDFDD EYSWIPSSFA GQGDADLWYA NFTTTPAYTG
VVSALEAGIE KGYKSKEKLR L
|
|---|
| |