| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_31523 |
|---|
| Symbol | |
|---|
| ID | 4838492 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009044 |
|---|
| Strand | - |
|---|
| Start bp | 1006692 |
|---|
| End bp | 1007408 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640389807 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384500 |
|---|
| Protein GI | 150865332 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.129639 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACTG AAGACGTGAA GACGTTAGTG AACTCTACCT CCAATAGTGC GGTTGATTTG
AAAATAAATT CCGAGTCTAA TGAACATGAG TTGTACTTGT TAGAAAGTGC TCCATACCAA
CGCTATAAGA AGGACTACGA TGAGTACCGT AAAGAAAACC ACCTCAGTGC TCATCTTATA
GTCGAACACA TCTGGCCCAA CTTGACTGGC CATACCCTTC GTGGTCCGGA TAAGATCAAC
TTTCGTTCAG ATAGCTTCTA CTTCATCAAC GAGAAGTACT GGTCCTACGA AGATGTAATA
GCTGAGGAAG GTCAGGAAAT TCTGGACAAC TACTCGCTCA CATTCTTCCA TTTGGGAGGA
AAGCTTTCGG GCCACTCAGG TATAGTTCAC GGAGGTTTGT TGGCTACCTT GTTGGATGAA
TTGACATGTC GTTTGGCGTT CCAGAATTTC GAATCCAAGA AGGGAGTCAC CGCCAACTTG
AATATCAACT ACAAAAAGCC AACATACACG GATAACTTCG TTCTCATCAA GTGTTCTTTG
CTCAAAAAGA CAGGCAGAAA GTGTTGGGTC AAGGGTGCGG TGTTCAAATT TGACACTGAA
AAGGACGAAC CAATTGAAGA AATCGAAAGC AAAGAAAACT TGCTTACTGA ATGTGAAGTT
TTGGTCATTG AACCTAAGTG GGTCAACGAG TTACAGAACC ATGACCAAAA ACATTAA
|
|---|
| Protein sequence | MATEDVKTLV NSTSNSAVDL KINSESNEHE LYLLESAPYQ RYKKDYDEYR KENHLSAHLI
VEHIWPNLTG HTLRGPDKIN FRSDSFYFIN EKYWSYEDVI AEEGQEISDN YSLTFFHLGG
KLSGHSGIVH GGLLATLLDE LTCRLAFQNF ESKKGVTANL NINYKKPTYT DNFVLIKCSL
LKKTGRKCWV KGAVFKFDTE KDEPIEEIES KENLLTECEV LVIEPKWVNE LQNHDQKH
|
|---|
| |