| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_31476 |
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| Symbol | NUP84 |
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| ID | 4838420 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009044 |
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| Strand | - |
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| Start bp | 898505 |
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| End bp | 901039 |
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| Gene Length | 2535 bp |
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| Protein Length | 844 aa |
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| Translation table | 12 |
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| GC content | 42% |
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| IMG OID | 640389735 |
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| Product | Nucleoporin NUP84 (Nuclear pore protein NUP84) |
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| Protein accession | XP_001384477 |
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| Protein GI | 150865315 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.267975 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCAGT CACGATGTCG TGATATTTTT CACTACTTAA TTTCGATAAA CAGAACTATT
CTTCAAGAGT TACCTAAGCT ATCTCCTTTG CCAGCGAGAA AATTGGGCTC TTACACTTGC
AAAACAGTGC ACATGACGAC TACGGAGTTA TTGCCCTTTC ATGCCGTTGG CACGTCACCA
GATGCCGCAG CCCAGGCCGA CTCCAACATA GAGACGCAGT TTGCCAATGT GCTCCATTCA
CTACAAGTGA ACAAACAGAG GGATCCATTT GATATCATTC AGGATTTCAA GCAGATTTGC
GCTGACAGGG CACTTTCTAC TCGTGACAAA CTTTCACTTG ACGAAAGCAA TACCGCACTT
GCTGAAGAGT TTGACAACTG GGACTTGGAG TTCAAACTCT GGGAACTTGT TGATCGGTTG
TTCCGTTTCC GAGCTCTATT CAGCAATAAA GCCAAAACCG AATTGCTTCG TGAATACGAC
TTTTCGTCTA TGGGAATCAA GCAGGAGAAC TTTTTGCGGA AAAATCCAGC GATCAGAGAG
CTTTCCATCA TCATCCTCTG GCTCCAGTCG CATACTCCAT CTCTTGTAGG AGACGAAACC
GAATCTTACC AGACGAAATG GAAGAATACT GCCATGGCCG TTGCAAATTC CGACTTCGAT
GTCTTAGCTA GTCGAGCTAC TGATGCTGAT TTGATTGATA AGCTCGATAT AGATGCACCT
TTGCGTAGTA ATAGATCCAT TCATCCAGCA GATGAATCCA ACGACTCTAA AGTATTTGCT
CAGATCTACA AGTTGCTTCT TCAGGATAGG GTCCAGGATG CAATTGATAT TGCCAACAAT
ACGGGTAATT ATGCTTTGGC TTTGATTCTT GTCGGCGCTA CCCAGGAGTA CTTTGATCCT
GTTCTAGACA AGCAGGATCT GGACTTTGAT TCTATTGTAG CAGAACAGAC AAAACCTTCC
GGTATCAAGC ACAAGCTTTT ATGGAAGAAA ACAGTGTACA AACTCTCGCA ACAGGCGAAC
TTGAACAAGT ACGAGAAGTT GATCTATAAT TACTTGTGCG GCGGTGACAT TTCAGGCAAC
TTACTGGTGG CTTCTGATGA CTGGGAACAG ACTTTACTTT TGTATTTGAG TCAGCTCTAC
TCCTACAACA TTGACAATTT TATTGTATCG CAGTTGTCTT CTGAACAGGA GATTTTGCCT
GTCAACATTC CCAAGCCTCA GCTAAACACG ATTGCTGAAA TCTTGAATAC CATACTGCAC
TCAGGTAATT TGTTGACTCA GCAGAGTGAA AACCCGCTCA GAGTCATCAT GGGAAGCGTG
ATGTTAGATA ATGTCCCTTC TTTATTGCAT AATTTGACCA GTTCACTGAC TGGAGAGCCA
GAAGCTCTCA AGAAACCATA CATTTCCAGA GTGCTAACTC ATTTGGCTAT ATTCCAGCTT
CTAGTAGTAG GTACAGACAA CATCAACAAC GAGGATATCA CGACTATAAT TACCTCGTAC
ACGTCCAAAT TGGCAGAGTA CAAGTTGCCT GAACTTATTC CTATCTATCT ATCGTTTGTA
CCTAACGAAA AGGACTCTCG TGAAGCGTAT GCACTTTTCT TGTCCTCGTT GACAGACTCA
TCTGATCGTA GCAAACAGAT AGAAATCTCG CGCAGAATTG CAAATTCGAT CTCAGAAGTA
GACGAGGCTA TGGAGCTCGC TGCAAATACC CAGGAAGACA AGATGATGAA TGTTTTGCGT
AGAACTGTTG AAAGGGTGAT GAAAGATACT GAATCGCACT ATAAACCACA GGCAGTAATT
GAAGTTCAGG ATGATATCAA CTCTGTAGAT GATATTGATT CCAAGTTGTA CCACTCCGTT
GAGTGGTTCT ATGAGAATAA AATGTATGAG GATGCGATTG TCGCAACTAT TGCCATCATC
AGAAGATTTC TTCTTTGCGG AAAACTAGCT CCTTTAAAAG CATTTAGTAA GGGAAAGAAC
TTCAAGTTGT TATTAGTCGA ATACGATACT CAGCTTCAAA CAAAGAGTTT AATTTTTCAA
AATGAGCCAG AGATCGTCAC AGAAGAAGAC AAAGAGGAAT TGTTAGCGTA CGCATCTCTC
ATAGAAGGTT TGATCTTGAT AGACGAGTGG AAGAAGTTTG TAAGCACTCA AATCAATAGT
CAGGGTAAGT GGCTTTCTAC TGGTGTAGAT AGCTCGATAG ATAAAACAAG CAAGACTTTA
TTGAATTTGA TTTTCAAGTG GTTCAAGAAT ACGTCATCCG AGAAAGATAG CGACTTGGCA
ATCTACTCTG AGTTCAGAAG CATTTATGTT CCGTACTTGA TTATCGAGTT GTTGAAGATC
TTCCAAAATG CAAGAGAAAA GGACTGGAAA TACATGAGAA GCGCCTTCTC GTTGATTAAT
GATGTTGCCA ATGAAGAACA AAACGACTTC TTGAGCTGTT TCTTGAAATG TGGAAGACTC
GATGAGTTTT TGGTGAAGGC CGGAGAGGTC TCGATCGTTG CTGTAGAGAA AGGAATCTCT
GGGATATTCT ACTAG
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| Protein sequence | MSQSRCRDIF HYLISINRTI LQELPKLSPL PARKLGSYTC KTVHMTTTEL LPFHAVGTSP
DAAAQADSNI ETQFANVLHS LQVNKQRDPF DIIQDFKQIC ADRALSTRDK LSLDESNTAL
AEEFDNWDLE FKLWELVDRL FRFRALFSNK AKTELLREYD FSSMGIKQEN FLRKNPAIRE
LSIIILWLQS HTPSLVGDET ESYQTKWKNT AMAVANSDFD VLASRATDAD LIDKLDIDAP
LRSNRSIHPA DESNDSKVFA QIYKLLLQDR VQDAIDIANN TGNYALALIL VGATQEYFDP
VLDKQDSDFD SIVAEQTKPS GIKHKLLWKK TVYKLSQQAN LNKYEKLIYN YLCGGDISGN
LSVASDDWEQ TLLLYLSQLY SYNIDNFIVS QLSSEQEILP VNIPKPQLNT IAEILNTISH
SGNLLTQQSE NPLRVIMGSV MLDNVPSLLH NLTSSSTGEP EALKKPYISR VLTHLAIFQL
LVVGTDNINN EDITTIITSY TSKLAEYKLP ELIPIYLSFV PNEKDSREAY ALFLSSLTDS
SDRSKQIEIS RRIANSISEV DEAMELAANT QEDKMMNVLR RTVERVMKDT ESHYKPQAVI
EVQDDINSVD DIDSKLYHSV EWFYENKMYE DAIVATIAII RRFLLCGKLA PLKAFSKGKN
FKLLLVEYDT QLQTKSLIFQ NEPEIVTEED KEELLAYASL IEGLILIDEW KKFVSTQINS
QGKWLSTGVD SSIDKTSKTL LNLIFKWFKN TSSEKDSDLA IYSEFRSIYV PYLIIELLKI
FQNAREKDWK YMRSAFSLIN DVANEEQNDF LSCFLKCGRL DEFLVKAGEV SIVAVEKGIS
GIFY
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