| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_31367 |
|---|
| Symbol | |
|---|
| ID | 4838445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009044 |
|---|
| Strand | + |
|---|
| Start bp | 613592 |
|---|
| End bp | 615445 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640389760 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384083 |
|---|
| Protein GI | 150865033 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.322379 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0602507 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCTTG CACATCGCAT TAAGAAGGGT GCCTTATTGC TTCTTATTTT ACTTTTTGGA
ACTTTCAGTT TCTACTATTT AAAGTCATAC GACAGTTTGG TTCAATTGCA AAGTTCGCTA
GCCAAACAGA ATTTCATACC CATTTCCCAC TATCCAAGTT CAGAGCCACT TGTGATTTTC
CCAAAAGTAT ACAATCATTT CACTGGCAAC TTTACTGACC TCTACCACTT TCAGTACACC
CATGATACCG TGAAGCCTAG AAATGTCGTC CAGTATTCTG GCAATTCTTC GACCTTGTCT
CGGCGTATTG TAGACCAGAA CTTCAAGCAG CATCCATTAA TTGTTTTCGA TTCAAACAAC
GAGCAAGAAG AATGTTCCAA ATTGAAGGAT TCTCGCATAA TGGAAATCTC AGCTTATGAA
GAGCTCGATC GTCTGTTGGA GCCTATGGTA ACACAGCTTT TGTATCAGCT TGAGAACGAT
GAAGCTTTTT TTGAAATGAA GGATGTTTTC ATGAAGGAAA TTCAGAGGCA ACAGGAAGAA
GGAATTCTTC ATAAGCATTT CTTCAAGTTT GGTGGAACTT CTGTATGGTT GAAAGAGCAT
GGAGTTCATT TCATGATATC AAGAGTAGTC TTCAGTCTCA AAGGCTTTAG AAATGCTGCA
ATAGTGAGTT TGGCATATGC CCAAATTTTC AACGACAATT GGGAAGAAAT GAAGGATGTA
GAATTGATTT TTCCTTCGCG ATCTCCCCAT AGTGATGAGC CCATAGTATA TAAGAGTATG
AAGTTCCCAT CATTCCTTCC AATACCTTAT TATCAAAATT TTGATTACCG GGAATCTAGA
TTTTATGGAC CAGAGGATCC TAGACTTTTG CTAGTGAAAA ATTCATTGGG CCACGAAGAA
CCGTTAATGG TTTTCAATGC ATTCCAGCGT AAAATTAACC AAACCAGTTT GTCCGAAGAA
GGACAGATGA ATGTGACCTT CGGGTTCTAT CGTCTGATGT TCCTTTGCTG GCCATTCCAA
TTTCAAACAG GTAAGGGTGA CATCGAAGGA GTCAGGAACG AAACCACAGA CCATATTGTA
TACAACAAGA TTGTGGAATT GAGGAGAGAT AACACCCAAA GGTTAAAGAA GCAGAAAAAC
TGGACTCCAT TTATAGATTT GACGGAAAGA GATGACAATT ACGACAAACA CATATACTTT
GTCTACAGAT GGTCCAGTTT GGAAATTTTG AAATGTAAAC TCACTGATTT CTCCAAGGTC
GGAGAGTCGC AGTGTTTGTT TGTTTATAAA CGAGAGACCA AGCAGAAGGA TGATATTGAT
GTTGGATCTC TAAGAGGAGG TACGGAACTT CTCCAAGTAG ATGTAGGTGG ACACAAAGCA
TGGGTAGGAT TCCCTCGAGC TCACATTAAG TATTGTGGAT GCGGCAGGGC CATGTACCGA
CCAAACTTGG CGGTTCTAAC ACAGCACGGA AGAGAATACA AAATCAGCTA CGTTTCTTCC
TTTATTTCTC TTGATGTGAA AATTATAGGC TGGATGAATC CGGATGTAGA GTGTGTTGAG
AAAGACCCCA GTGTAATGCT TCCTAATGGT ATCTCATCCT GGGAGACTAT TGGAGAAGTT
GATTATTTGA CGTTGACAAT ATCTGTCACT GATGAATCAA ATCATATCAT CCAGATAAAG
AATTTGCTTG AGCACATCAA ACAAATGACA ACAACAGAGA ATCCTACATT AGGGTTCAAT
GACAATGCTA TTGACTGTGC TATCAAACAG TCTAAGAACT TTTGCAAAAA GTACGGAGAT
CTGCAGAGGA AGATGCAAAA AGAGAAGAAG TTGATGGAAG ACAATGAAGA CTAA
|
|---|
| Protein sequence | MTLAHRIKKG ALLLLILLFG TFSFYYLKSY DSLVQLQSSL AKQNFIPISH YPSSEPLVIF
PKVYNHFTGN FTDLYHFQYT HDTVKPRNVV QYSGNSSTLS RRIVDQNFKQ HPLIVFDSNN
EQEECSKLKD SRIMEISAYE ELDRSLEPMV TQLLYQLEND EAFFEMKDVF MKEIQRQQEE
GILHKHFFKF GGTSVWLKEH GVHFMISRVV FSLKGFRNAA IVSLAYAQIF NDNWEEMKDV
ELIFPSRSPH SDEPIVYKSM KFPSFLPIPY YQNFDYRESR FYGPEDPRLL LVKNSLGHEE
PLMVFNAFQR KINQTSLSEE GQMNVTFGFY RSMFLCWPFQ FQTGKGDIEG VRNETTDHIV
YNKIVELRRD NTQRLKKQKN WTPFIDLTER DDNYDKHIYF VYRWSSLEIL KCKLTDFSKV
GESQCLFVYK RETKQKDDID VGSLRGGTEL LQVDVGGHKA WVGFPRAHIK YCGCGRAMYR
PNLAVLTQHG REYKISYVSS FISLDVKIIG WMNPDVECVE KDPSVMLPNG ISSWETIGEV
DYLTLTISVT DESNHIIQIK NLLEHIKQMT TTENPTLGFN DNAIDCAIKQ SKNFCKKYGD
SQRKMQKEKK LMEDNED
|
|---|
| |