Gene PICST_27149 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_27149 
Symbol 
ID4839039 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009044 
Strand
Start bp128588 
End bp129322 
Gene Length735 bp 
Protein Length234 aa 
Translation table12 
GC content44% 
IMG OID640390354 
Productconserved hypothetical protein 
Protein accessionXP_001384323 
Protein GI150865202 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3703] Uncharacterized protein involved in cation transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.503803 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.389081 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GGTATGTGGG TAATTGGCTA CGGCTCGTTG ATCTTCAAAC CTCCCCACCA CTCATTCCGG 
GTAAATGGAT ATCTCAAGGG GTTTATAAGA CGTTTCTGGC AGAGTTCTTC TGACCATCGT
GGAACCCCAG AGGCTCCGGG CAGAGTAGTT ACGCTAATTT CTTTGGACGA CTTGAAGTCC
AACACAAAAT TTCACAACGA TCTCCACATG TACGAATTAA GAGCTACCCA TCAGGAGACT
GAACTCAAAC ACAACCGAGA ATCTACTCCA GCCCAGATAG TCGATGTAAA CCACAAGATT
AATAGCTTAC AAGTAGAGGA TTTGAAAGTG TGGGGTGTGG CATACTATGT TGAGCCACAA
GATGTAGCTG AAGTAAAAGA ATATCTTGAT GTTCGTGAAC AGGATGGGTA TACCACCCAC
AAGGTGCCGT TTCATATTCT CAATGTCGAG AATGAAAACG ACGTTTCTAA ACGAATCTTA
GCACAACTTC CCAGAGACAC TTCTTCTGGC GACTGCATCA TCGAGCTGAT GATCTACATA
GGCACTATTG ATAATGAGTC TTTCGTCGGT CCAGAAGCAA TAGAGGATAC TGCCAGTAAG
ATAAGTGTGT CTAGTGGTCC TAGCGGTTTG AACTCGGAAT ACTTGTTAGA GTTGACCAAT
GCTGTAAGAC ATCTAGATAA ACAAGACCGT TCCCGAGATT ACTACTTGGA GGACTTAGTG
GAATTGGTTC AACGT
 
Protein sequence
GMWVIGYGSL IFKPPHHSFR VNGYLKGFIR RFWQSSSDHR GTPEAPGRVV TLISLDDLKS 
NTKFHNDLHM YELRATHQET ELKHNRESTP AQIVDDLKVW GVAYYVEPQD VAEVKEYLDV
REQDGYTTHK VPFHILNVEN ENDVSKRILA QLPRDTSSGD CIIESMIYIG TIDNESFVGP
EAIEDTASKI SVSSGPSGLN SEYLLELTNA VRHLDKQDRS RDYYLEDLVE LVQR