| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_83020 |
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| Symbol | |
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| ID | 4838335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009043 |
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| Strand | + |
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| Start bp | 1281543 |
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| End bp | 1283124 |
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| Gene Length | 1582 bp |
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| Protein Length | 447 aa |
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| Translation table | 12 |
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| GC content | 45% |
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| IMG OID | 640389650 |
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| Product | predicted protein |
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| Protein accession | XP_001383530 |
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| Protein GI | 126134011 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG3425] 3-hydroxy-3-methylglutaryl CoA synthase |
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| TIGRFAM ID | [TIGR01833] 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.203181 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | CACATCGGAT TTCAAATTCT ACACTCTTTT CTTCAGTGGC GATTTTGGTT GTCTTTTTGC
TTCTTTTGCT TCACTTTCTT TAACAATTCA CATGTCTCCA CAGAATATCG GTATTAAGGC
CATTGAGGTC TACATTCCAA CCCAGGCTGT CAGCCAGTCT GAGTTGGAGA AGTTCGACGG
CATTCCTGCT GGCAAATACA CCATTGGCTT GGGCCAGACC AACATGGCCT TCGTCAACGA
CAGAGAAGAC ATCTATTCGC TCTCACTTAC AGTCTTGTCC AAGTTGATTT CTAACTATAA
GATCGACACC AACAACATCG GTCGTTTGGA AGTAGGCACT GAGACACTTT TGGACAAGTC
CAAGTCTGTC AAGTCTGTGT TGATGCAATT ATTTCCAGGC AACAACGACA TCGAAGGTAT
CGACACTGTT AATGCATGTT ATGGTGGTAC CGCTGCTGTG ATCAATGCCC TCAACTGGAT
CGAATCATCC TCGTGGGATG GTAGAGACGC TATCGTCGTC GCTGGTGACA TTGCTATCTA
CGATAAGGGT GCTGCCAGAC CCACTGGTGG TGTTGGTTCC GTGGCTCTTT TGATTGGTCC
AGATGCTCCA ATTGTGTTTG AATCTACTCG TGGTTCATAC ATGGAACACG CCTACGACTT
CTATAAGCCT GACTTCACTT CTGAATATCC CGTTGTTGAT GGCCACTTCT CTTTGGCTTG
TTATGTCAAG GCTCTTGACC AATGTTATCG TGCCTACTCC AAGAAGGTCA CCAAGGATGC
CACCAAGACC GTTGGACTCT ACAACCACTT CGATTACAAT GCTTTCCACG TTCCTACCTG
CAAGTTGGTG TCCAAGTCGT ACGCCAGATT GTTGTACAAC GACTACATAG CAGACCCAAC
CAAATTTGCT GAGACTATCG ATGAAGCTAC CAGAACTGCT CTCGACAGTT TGACCTACGA
GCAGTCATTG GTCGACAAGA ACTTGGAAAA GGTATTTGTA GGCTTGACTA AGCAAGAAGC
TAAATCCAGA TTGGAACCTG CTCTCACGGT ACCTACCAAC ACCGGTAACA TGTACACGGC
CTCTGCCTGG GCCTCGTTGT CCTCGTTGCT TTACTTCGTT GGCTCTGAGA AATTGCAGGG
CAAGAGAGTC GGAATCTTCT CCTACGGTTC CGGTTTGGCC TCTTCGTTGT TGTCTGTTGT
GGTCAAGGGA GATATCTCTG CCATCACTAC TAACTTGAAC TTTGACTACA AGTTGGGCGA
AGGAAGAAAG ATTGAATCCC CAGAACAGTA CATCGCTGCC ATTGCCTTGA GAGAAAAGGC
TCACTTGCAA AAGTCCTTCA AACCTACTGG TTCCATCGAC AACTTGGCCA AGGGTACCTA
CTACTTGGTT GAAGTTGACG ACAAGTTCAG AAGAAGTTAC GATGTTAAGA ACTAGATCTT
CTGAACCGTT TCATAGTACT CATCATGGCA TCTGTTAAAT CTTGTACTAT ATATTTGCTA
GCATATCGTT CCATCGTCTC GCTATTCTTT TACTTCGATA TATTCTACTT GTCCTTAGCT
ATTTAATAAT AGAACAACTC AG
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| Protein sequence | MSPQNIGIKA IEVYIPTQAV SQSELEKFDG IPAGKYTIGL GQTNMAFVND REDIYSLSLT
VLSKLISNYK IDTNNIGRLE VGTETLLDKS KSVKSVLMQL FPGNNDIEGI DTVNACYGGT
AAVINALNWI ESSSWDGRDA IVVAGDIAIY DKGAARPTGG VGSVALLIGP DAPIVFESTR
GSYMEHAYDF YKPDFTSEYP VVDGHFSLAC YVKALDQCYR AYSKKVTKDA TKTVGLYNHF
DYNAFHVPTC KLVSKSYARL LYNDYIADPT KFAETIDEAT RTALDSLTYE QSLVDKNLEK
VFVGLTKQEA KSRLEPALTV PTNTGNMYTA SAWASLSSLL YFVGSEKLQG KRVGIFSYGS
GLASSLLSVV VKGDISAITT NLNFDYKLGE GRKIESPEQY IAAIALREKA HLQKSFKPTG
SIDNLAKGTY YLVEVDDKFR RSYDVKN
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