Gene PICST_82538 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_82538 
Symbol 
ID4837818 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp230482 
End bp231142 
Gene Length661 bp 
Protein Length170 aa 
Translation table12 
GC content42% 
IMG OID640389133 
Productpredicted protein 
Protein accessionXP_001383674 
Protein GI126134299 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.555733 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.234414 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
CAGGGATTTC ACGATGGTTT TGGGCGACTT ATTCACTTCC AGACACCAAT GGGAGAATGT 
GGACAAAAAT GGATTGCCGG ACTCGGTTCC CGAAGTAGAT GAAGTGGGAG CCACTTCGGC
ACCTTTATTA TCGGCATCAT ACTATATTGG AGCCAAGTGC AAGCCATACA ATGACGATTT
TATGTTGTGT AAAGACGAGA AAAACGGGGG AACATTAGAT TGCTTGAAAG AAGGAAGACG
AGTCACGAGA TGTGCCATTT CTGCCTTGAA GGATATCAAC AAGTACTGCT TTGATGAGTT
TAAGCTTCAC TACGAGTGTC TCGAACAAGA GAACCACAGA ATGGGTCACT GTAGAGCTTC
AGAATCTGTT TTAAACAAGT GTCTTTTCCA GAACTTGCAG TTTGAGAAGA AGATTCCTGG
TGTGGAACAG CAGATTCACT TGAACCAGAA CCCTATTTAC CAGGGCACTT CCAATGACAA
GAAGAAGACA GCCGAGTTTG TTAAGGCCAA AGAAGCTGCT TCGTAGACAT TGTATTTATC
AGCACGAGTA TCATGACACT CACATTATAG TTCAATGGTA GCAGAACACG AGTCCTGTTG
CCTCTGCATT TCATTTCATG ACTTGGAATT CATATTTAGA AAATGTATAT GAATCATCGT
T
 
Protein sequence
MVLGDLFTSR HQWENVDKNG LPDSVPEVDE VGATSAPLLS ASYYIGAKCK PYNDDFMLCK 
DEKNGGTLDC LKEGRRVTRC AISALKDINK YCFDEFKLHY ECLEQENHRM GHCRASESVL
NKCLFQNLQF EKKIPGVEQQ IHLNQNPIYQ GTSNDKKKTA EFVKAKEAAS