| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_71522 |
|---|
| Symbol | YPT1 |
|---|
| ID | 4837695 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009043 |
|---|
| Strand | - |
|---|
| Start bp | 635413 |
|---|
| End bp | 636172 |
|---|
| Gene Length | 760 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640389010 |
|---|
| Product | GTP-binding protein of the rab family |
|---|
| Protein accession | XP_001383756 |
|---|
| Protein GI | 126134463 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1100] GTPase SAR1 and related small G proteins |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.203181 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAACG AATACGACTA TTTATTCAAG TTGTTGTTGA TCGGCGACTC GGGCGTTGGC
AAATCATGCT TACTTTTGAG ATTCGCTGAT GACACCTATA CGCCAGACTA CATTTCCACC
ATCGGTGTAG ATTTCAAGAT CAGAACGATT GAGTTGGACG GTAAGACCAT CAAGTTACAG
ATCTGGGATA CTGCTGGCCA AGAGCGTTTC AGAACCATCA CGTCGTCATA CTACCGAGGT
GCTCACGGGA TCATCATTGT GTATGATGTC ACGGACCAAG AATCGTTCAA CAACGTCAAG
CAGTGGCTCC AAGAAATTGA CCGTTATGCC ACTGGCGGCG TGATGAAGTT GTTGGTGGGT
AACAAGGCAG ACTTATCGGA CAAGAAGATT GTCGAATACA CGGCCGCTAA GGAGTTTGCG
GATGCGCTTG ACATTCCGTT TTTGGAAACT TCTGCTCTTT CGTCCACCAA CGTTGAACAG
GCCTTCTACA CCATGGCTAG ACAGATCAAG GCTCAGATGA CCAGTAACGT CAACGCCAAC
GCTGCAAGTG GCGCCAACGC AGGTAAGTCC AATGTCAACT TGAGGGGCCA GTCGTTGACT
TCTGGCCAAA CAAATTCGTG TTGTTGAATA GACCCAGTTG TAGAGTTTTC GATACTAATG
ATGATAATAA GAAGAATATT ATTGTAATCA CAGGGTCCGC GGATCGGTTG CTAGTATATA
CTGTTGTTAC AAGTTGTTTA GGTAATATGA TTATATTGTG
|
|---|
| Protein sequence | MNNEYDYLFK LLLIGDSGVG KSCLLLRFAD DTYTPDYIST IGVDFKIRTI ELDGKTIKLQ
IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDQESFNNVK QWLQEIDRYA TGGVMKLLVG
NKADLSDKKI VEYTAAKEFA DALDIPFLET SALSSTNVEQ AFYTMARQIK AQMTSNVNAN
AASGANAGKS NVNLRGQSLT SGQTNSCC
|
|---|
| |