| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_71285 |
|---|
| Symbol | |
|---|
| ID | 4837749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009043 |
|---|
| Strand | - |
|---|
| Start bp | 769579 |
|---|
| End bp | 770489 |
|---|
| Gene Length | 911 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640389064 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001383781 |
|---|
| Protein GI | 150864805 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG5078] Ubiquitin-protein ligase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.205433 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GACTGTTCAA CATCCAAACG ATCGCGAAGT AACTGTGAGG TCAGAACGAA TTGGGAGAAT
TGACTAATTT GAAGAATTCC CAACCAGTAG TTCTCAAAAA AAAAATCGTT TTGGAGCATT
CAGTATTTCT GAGATTGTTC ATTGATTCTA ATTCATTAAA CGTAATTCAT TGATTACGAA
TCATTCTTCC ATAAATTTGT ACTTCGTTTC TCAAGTCTTA CCAAATGTCT CGTGTTAAGA
GAATTGCCAA AGAATTAGAA GAATGTCGTC AAGACACGCA GTCTGGTGTT TCGTTGAAGT
TGAACAATGA AAACGACTTG ACCAAGTTGA CTGGTTTCTT CAAAGGGCCA CCAGGCACTC
CGTACCAAGG AGGTGTTTTT CTGGTTGACA TCACCATCCC CAACGAGTAT CCATTCAAAC
CACCAGTGAT GAAATTCCTG ACCAAGATCT ACCATCCCAA CATCTCGTCA GTGACTGGGG
CCATCTGTTT GGATATCTTG AAGGACGCGT GGACTCCCAT CTTGACGTTG AAAAGCACCT
TGATATCATT GCAGTCGTTG TTACAATCGC CGGAACCAAA TGATCCACAA GATGCTGAAG
TTGCTAAGCA TTACTTGACT AACAAGACAG GCTTTGATGA AACAGCTGCG TACTGGACCA
AGATCTATGC TAGTGACAGA GACGAAGAGG GCAAGTCCGA GTTCAGCGAC TCGGCCCTTT
ACGGAATAGA CGAGTCAATT GTAGGCCAGT TCGAAAACAT GGGCTTCCCC CGTGACAAGA
CCATCGAGGT GTTGAGAAGA ATGGGTGTCA AGAGCTTCAA CGGTGTCAGC AACAAGGGCG
ACTTGGAGAA CCAGATATTG GAAGAGTTGC TTAAAGAGTG TCAATAAGCG TATAGAATAC
TAAGCTTAGC T
|
|---|
| Protein sequence | MSRVKRIAKE LEECRQDTQS GVSLKLNNEN DLTKLTGFFK GPPGTPYQGG VFSVDITIPN
EYPFKPPVMK FSTKIYHPNI SSVTGAICLD ILKDAWTPIL TLKSTLISLQ SLLQSPEPND
PQDAEVAKHY LTNKTGFDET AAYWTKIYAS DRDEEGKSEF SDSALYGIDE SIVGQFENMG
FPRDKTIEVL RRMGVKSFNG VSNKGDLENQ ILEELLKECQ
|
|---|
| |