| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_67218 |
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| Symbol | RFG1 |
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| ID | 4837826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009043 |
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| Strand | + |
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| Start bp | 236305 |
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| End bp | 238238 |
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| Gene Length | 1934 bp |
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| Protein Length | 517 aa |
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| Translation table | 12 |
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| GC content | 47% |
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| IMG OID | 640389141 |
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| Product | ROX1-like HMG-box transcription factor |
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| Protein accession | XP_001383328 |
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| Protein GI | 150864491 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.742387 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TGTATTTTGT TTTGATTTAT CGGTTTGCAC TGGTCAATCA GCCCAATCAT TACCCCAGTT
AGCGAAATCT TCCGTAAACC CATCGCACAG GCCGAGCCCA GTGACGAAAT TAAATTGGAA
CTGCCATCCC CAGCCCACTC TAGCTATCCG GTGATATGTC TACTGCAGTG TATTACGACA
ACCTCCAGAT GCCACTTGAA GACATTCATT CCAAACCCAG CAACATTTTA CCTTCATTAG
CACAGATTAT ACCTCCAATG AGCCACCAAT CGCAGCAGCC CCACAGTATT CAGTCTTCCT
CGTCGTCGTC CTACACCCAC GATGCGTCGC TTGTAGCCGT AGCTGCTTCT CCAGCCAACT
CCACTCCCAC GACAACCACC GGGCAGATTT CTCCCAACTT GGTAGGTTCC AGCTTGCCTG
TCGCAGTCAA CGTTTCCGGC ATGCCTGTTT ATACCGATTC CAAGACGTTG TACCCTTCTA
GCCAGTCTGA TGTTTACGTC GGGCTGCAAC TTCTGACTGC CAGCACGACA CCAGCTGCCT
TAGCTTACTC TGTCAACTCC AACATTAGTC CCAGCATCAA CGTTAATGGC AATGCTACCT
ACGGCACAAG CCAGATGGTT GGACCTGGTC CGATGAACGG TGCCGAAGAA AAATGTATTT
GCAAACTGAA CGCTAACCGT ATTCCCAGAC CGCGGAATGC TTTCATTCTC TTCAGACAGA
AGTATCACCA GTCGGTACTC GACGAAGGCA ACGTGATCCG GACCAATCCC GAGGTTTCCC
GTGAATTGGG CCGTAGATGG CGTTCGCTTT CGGCTTCAGA AAAGGACCAC TGGAACAACT
TGGCCGAGGA AGAAAAGAAG AATCATGCCA AAAAGTACCC TGGATACCGT TACACACCTA
GAAGAAATGG TAAGAACAAG AATTGCCCTG CTTGCCGCCA AAAAGCTATG AGACAGCAAC
AGGTTCAATT GCACAACCAA CAGATGCTCC AGATTCAGCA GGAACAGTAC CAGCAGTACT
TGCAACTTCA GCAGCAACAG CAACAACAGC AACAACACAT AATGAGCCAA CAACAGCAAC
AGCAACACAT AATGAGTCAA CAACAGCAAC AACAACAACA ACACATAATT GGACAGCAGC
AACAACAGCT GCAACAGCAA CAGCAGCAAC AAAATCTAGT GGCCCAGCAG CCTCAGAATG
CTCAGCAAAT TCAGCTCCAG CAACAACAGC AAAACTCGCA GCTTGCGGGT GCAAATCTTA
TGGGTGCAAA CCAGCAGTAT GTGATTTCGT CAAACCCTTA CCATGGCAAC GTTCTTGTGG
CTCCTCCGGC AGCTGCAAAC TACCAGGTTT CGTTCAACAA CGATTTGGGC AGTGTTGGCA
ATACAAGCAG CAGCAGCAAC CAAGACAAGT TGTCGCCGTT ATCCAATATC CCCAACCAAC
AATTTGCATT ACATCCTAAT ACCCAACAAG TCCCTGCTGG ATCAGGCACT ACTCTGCATA
ACCCTTCTCA TCTAAGCTCA GCTTCCAACG AAATAATTGG TGGTTCTGGC GCTCAGTTTG
CTATTGGCTA CGATCAGCAC CAGCAGGTAC AGCAGGTACA ACAGCCGGTT GCGGGCTACT
ACCAGCATCA GCAGAGGTAC AACTCTGCTC CGGGAGGAAA CAACTACGGC TACGACAGTT
TTGGTGTTCA GCACGGTTCG CAACAATAAG CTGCAAGACC GGCTCAAATT GAAATTCCCT
TGTATATATA AAAAGGTGAA CTAGTTTGGA ACAGTGGACG TTGAACTAAT AGTCTGGTTT
TGCGGACGAG TTGTTCCCTC TGTATACTGC AGAATATTGT AACATTATTT GACATTAAAT
TTAGTTAGAC TTTAAATATG ATGGATACTT CAGCATCATA ATAATTATTG TACAAATAAA
ACGTTTCAAA ATAG
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| Protein sequence | MSTAVYYDNL QMPLEDIHSK PSNILPSLAQ IIPPMSHQSQ QPHSIQSSSS SSYTHDASLV
AVAASPANST PTTTTGQISP NLVGSSLPVA VNVSGMPVYT DSKTLYPSSQ SDVYVGSQLS
TASTTPAALA YSVNSNISPS INVNGNATYG TSQMVGPGPM NGAEEKCICK SNANRIPRPR
NAFILFRQKY HQSVLDEGNV IRTNPEVSRE LGRRWRSLSA SEKDHWNNLA EEEKKNHAKK
YPGYRYTPRR NGKNKNCPAC RQKAMRQQQV QLHNQQMLQI QQEQYQQYLQ LQQQQQQQQQ
HIMSQQQQQQ HIMSQQQQQQ QQHIIGQQQQ QSQQQQQQQN LVAQQPQNAQ QIQLQQQQQN
SQLAGANLMG ANQQYVISSN PYHGNVLVAP PAAANYQVSF NNDLGSVGNT SSSSNQDKLS
PLSNIPNQQF ALHPNTQQVP AGSGTTSHNP SHLSSASNEI IGGSGAQFAI GYDQHQQVQQ
VQQPVAGYYQ HQQRYNSAPG GNNYGYDSFG VQHGSQQ
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