Gene PICST_57620 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_57620 
Symbol 
ID4837968 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp1392019 
End bp1393923 
Gene Length1905 bp 
Protein Length635 aa 
Translation table12 
GC content39% 
IMG OID640389283 
Productpredicted protein 
Protein accessionXP_001383557 
Protein GI150864645 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.178714 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.258096 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGAAGA CTGAACCCCA GAATTTGCGT CTCTATGACC TTGAGGGATG TCTCCCTTCC 
TACAACGTGA AATCCACAAT TGTACAATGT GTTGGCACTG ACTATGTGTT TCTATATGGT
GGTTTCGATG ATATGGATAT TTTGGATAGC AATGTGTACT TATTGAACTT GAAGACCAAG
ACCTGGGAGG TGGACGATAA GCATGATGGT TTATATAGAG AGGGTCATCT GGCTGTCTAT
ATAAGCAATG GCAATATTTT AGTGTTCGGA GGTGTACCAT ACGATGAGTT TCCAGTACCT
TCAGTTACTC GTCAAAGAAC TGCTCCTGCA ACGTTTCGAA AAGATAGTTT GATGATGATC
TACAACATAT ACGACAGGAA ATGGATCGGA CCTCCACCTT TTGCGCTTGA TAATGCGCCA
TCTTCGAGAT CAAGACATGC GTGCTGTCTT TCTCCGGACC ATTCAAAGCT ATACGTAAGC
GGAGGACTTG TTAAGTCTGC TCCATTGGAT GATTTATATT GCTATGACTT GACTTCTGGT
TCGTGGCTGG GTCCAATAAG ATTCGTATCT CGTTTTGATC ATTTCATAAC AGTATATGGC
GATAAGCTAT ATTCATTTGG AGGTTTGGAT AAGGACATGA ACCATGTCAA AGACACAATT
ACTTTCTATT CATTTAAGAA TCATACTATT GGCCAAATCT CCATAATACA AAAACCAGAG
TCATCCACTA TACTAGGGAA GGAGGACGAG CTCAACCTGG AGTTTGATTC TCATAGCACA
TACAATCCAA ATGATTGCGA ACGTCTATAC GTCGACTCAG TCATTAATCT GTCTATCATA
TTGGATATTT CTCTACCTTC CTGGAGTGCT ACATCTGGTG GGTTGATCAT ATCTAATTTC
GATCTTGATG ACTTCGAAAC TCAAGAAACA TTTAATATTC GTAATATTGC CATGATCTAC
AATAGAGCTA ACAAGATCGA CGTCATGAAC TATTCATGGA AAGAAACATT TGTCAAAGAA
AATGGAACCT TGTACTTGTT GGGGACAAAC TTCAACAGTA CAAATGTGGT TCCTGATACA
GCGAATGCAA CAGCAGATTC AATACCTGGC GAAGATGGCA CCACTGATGG CATGGACGAA
ATGGAAAACG AAGAAGCATC GGGCATAGCT AAGTTAGGTG CTCTTTTTGA GATGAAATTG
AGTGATCTCG GAATACCATT CCGCAAAAAT ATTAGCCTCG AGAAAAGTCA AATCCAGAGT
AGTATTCCAT TATCAATGGA TTACGAGAGG TTTCTTTTGA GCGAGCAATT CACTGATTTC
GAGATTGTAA CTTTGGCCGA TGAAGAAGAT AGAGATAAAT ATCAAGAATC TTTCTCTATA
ACGGAACTGG ACCCTTCAAG TATCAAAATT GTAAAGGTTC ATAAGGCAAT TCTATTATCC
AGGTGGCCCC ATTTTCAAAG ATTAATTGCA ATTGGGATGG CAGAAACAGT TCTGAATAAG
ATGTTTATTC CTGAACCACA TCGTTGGGTC AAAGGATTGC TTTATTACTT GTACGTTGGA
ACAATAAATG TTGATTCTTA TGTTCATGGG CCATATACAA TATTGGATTA CCTAGGTTTG
TCAATGCTTG CAAATATGTA CGAGCTTCCA GATTTGAGGA CTTTGGCGAT GCACAAATTG
TTCAAACTAT TCGACCAACT TCAACTATCA TTTGACGCGC AGAACGATGA GATGATTTCA
ATATTGCTTA AGCTCTGGCG GGAATTATCC TTTGCAAACG AAATCGTCCT TCGTGTGAAA
GTTATGGATA TGATAAGAAG ATACTGGGCT ACTATTACTC GGTCAAAGCC ATTCTTCTCG
TTGTCCAAGG ATGAAATAGT AAAACTTTGC CAAGATTCAA GTGAT
 
Protein sequence
MVKTEPQNLR LYDLEGCLPS YNVKSTIVQC VGTDYVFLYG GFDDMDILDS NVYLLNLKTK 
TWEVDDKHDG LYREGHSAVY ISNGNILVFG GVPYDEFPVP SVTRQRTAPA TFRKDSLMMI
YNIYDRKWIG PPPFALDNAP SSRSRHACCL SPDHSKLYVS GGLVKSAPLD DLYCYDLTSG
SWSGPIRFVS RFDHFITVYG DKLYSFGGLD KDMNHVKDTI TFYSFKNHTI GQISIIQKPE
SSTILGKEDE LNSEFDSHST YNPNDCERLY VDSVINSSII LDISLPSWSA TSGGLIISNF
DLDDFETQET FNIRNIAMIY NRANKIDVMN YSWKETFVKE NGTLYLLGTN FNSTNVVPDT
ANATADSIPG EDGTTDGMDE MENEEASGIA KLGALFEMKL SDLGIPFRKN ISLEKSQIQS
SIPLSMDYER FLLSEQFTDF EIVTLADEED RDKYQESFSI TESDPSSIKI VKVHKAILLS
RWPHFQRLIA IGMAETVSNK MFIPEPHRWV KGLLYYLYVG TINVDSYVHG PYTILDYLGL
SMLANMYELP DLRTLAMHKL FKLFDQLQLS FDAQNDEMIS ILLKLWRELS FANEIVLRVK
VMDMIRRYWA TITRSKPFFS LSKDEIVKLC QDSSD