| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_57234 |
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| Symbol | RRP3 |
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| ID | 4838114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009043 |
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| Strand | + |
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| Start bp | 1215173 |
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| End bp | 1216363 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 12 |
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| GC content | 43% |
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| IMG OID | 640389429 |
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| Product | ATP-dependent rRNA helicase RRP3 |
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| Protein accession | XP_001383517 |
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| Protein GI | 150864621 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0347564 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTTT CCAAGCCTAC ACCCATTCAG TCTGAAGCCA TTCCTCATGC TTTGGAAGGC
AAGGACATCA TTGGATTAGC GCAAACTGGT TCCGGTAAGA CTGCTGCATT TGCCATTCCT
ATTCTTCAAT CGTTGTGGGA AGCACAGACA CCATATTTTG GACTTGTATT GGCTCCAGCC
AGAGAGTTGG CATATCAAAT CAAAGAAACA TTCGATGCTC TTGGTTCCAC CATGGGAGTT
AGAACTGTTT GTCTTGTAGG AGGAATGGAT ATGATGGACC AGGCTAGGGA CTTAATGAGA
AAACCACACA TTATCATTGC TACACCTGGT AGAATCATGG ATCATTTGGA GCATACCAAG
GGCTTCTCAC TTAAGATGTT GAAATATTTT GTTATGGACG AAGCCGATAA GCTTTTGGAT
TTGGAGTTTG GACCAGTTTT GGACAAAATC TTGAAGCAGA TTCCTTCCAA AAGAACAACA
TACTTATTTT CTGCTACTAT GACAAACAAG ATTGAGAAGT TACAGAGGGC CTCATTGCAC
AACCCAGTGA GAGTAGCGGT GTCCAGCAAG TACCAGACTG CCGACAACTT GATCCAGCTG
ATGATGCTTG TCAGTGACGG GTACAAAAAT ACCTACTTGA TCCACTTGTT GAACGAGTTT
GTAGGGAAAT CCATTATCAT TTTTGCCAGA ACCAGAGCGC ATACTCAGAG AACTTCCATT
CTCTGTAGAA TCCTAGGATT TTCTGCTGTG CCTTTACATG GAGATTTAAC CCAGGCTCAA
CGTTTGGGTT CGTTGAACAA GTTCAAATCA GGCACTGCCA ATATCTTGAT TGCAACTGAT
GTTGCAGCAA GAGGATTAGA TATCCCTTCA GTAGATGTGG TTATTAATTA CGATATTCCT
ACTGATTCAA AAGCATACGT TCACAGAGTA GGCAGAACTG CTCGTGCTGG AAGATCTGGT
AAATCGATTT CTCTAGTCAC CCAGTATGAC TTGGAAATGT ATCTACGTAT TGAACAGCTG
ATCCAGAAAA AGTTGCCTAA AGATCCTTCC CCACCAAAGG CAATGTTGGA TGCTTTGCAT
GTCCACGTTG ATAGGGCCTA TGCTGAAGCT ATCAGACAAA CAAAGGAGTT CCATGAGAAG
ACCAGAAGGG GCAGAAGAGG TAAGGACGAC AAGGATAGAG AAGAACACTA G
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| Protein sequence | MKFSKPTPIQ SEAIPHALEG KDIIGLAQTG SGKTAAFAIP ILQSLWEAQT PYFGLVLAPA
RELAYQIKET FDALGSTMGV RTVCLVGGMD MMDQARDLMR KPHIIIATPG RIMDHLEHTK
GFSLKMLKYF VMDEADKLLD LEFGPVLDKI LKQIPSKRTT YLFSATMTNK IEKLQRASLH
NPVRVAVSSK YQTADNLIQS MMLVSDGYKN TYLIHLLNEF VGKSIIIFAR TRAHTQRTSI
LCRILGFSAV PLHGDLTQAQ RLGSLNKFKS GTANILIATD VAARGLDIPS VDVVINYDIP
TDSKAYVHRV GRTARAGRSG KSISLVTQYD LEMYLRIEQS IQKKLPKDPS PPKAMLDALH
VHVDRAYAEA IRQTKEFHEK TRRGRRGKDD KDREEH
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