| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_57112 |
|---|
| Symbol | |
|---|
| ID | 4838024 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009043 |
|---|
| Strand | - |
|---|
| Start bp | 1578340 |
|---|
| End bp | 1579038 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640389339 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001383925 |
|---|
| Protein GI | 150864916 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG5296] Transcription factor involved in TATA site selection and in elongation by RNA polymerase II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.532654 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.460781 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | CTCAGCATCT TCTCCGATTC GTCTATATCT CATGAGGAGT TTGACAGATA TTTACATGAA
TTGGAAAAGA CTGGAGAAAC AATTGACTAC GTGGATGATG TTAACGATAA ATATGACCAA
TTGCAAGCTT TCTTCAATAG AGGTCTCAGT GACAAGGATG TCAATGAGAT GATTTCTAGG
AAGCAGAAAT TACAAGGTAG AGACGAATTG TCGGGTTATG ATGCAGTTAC GAGAAAGGCT
AGATTGATGG ACGAACTAAA GATCGCAAAG CAGCAGGCCA ACCCCCAGAA AGCGAGAGAA
ATCATCGACA AGTTGAAGAA ATTGGACTCA ATGTTGTTAA ATCAGACCAC CCACAACCCT
TCTCTGTCTG CCAACGTCAT GTCCAAAGTC AATGAAAGAA ACCGTAAATT GAATCTGACA
AACATCAGGA AGGCTGAAAT AAAATCTAGA AACACAGCAA CGGTGACGGA TGGTGGTGAC
CCTTTCTCAA GATTGAAGAC CACTACTAGA ATCTTCTATC AAGATTTGAT CAACCAGGAG
AATGAAAAGG CTATAAATGA TGCCAAAGCT AAGTACCAAG AGTTGTTGGA TGAAAAGAGC
AAGCAAGAAG AAAAGATTGC CAAGTCCACT TACAGAGAGT TTGGAGAGAT GGACAAACTT
ATCAAGAGCA TTGACATTGA CTTGGAAATA GTTATCTAG
|
|---|
| Protein sequence | LSIFSDSSIS HEEFDRYLHE LEKTGETIDY VDDVNDKYDQ LQAFFNRGLS DKDVNEMISR
KQKLQGRDEL SGYDAVTRKA RLMDELKIAK QQANPQKARE IIDKLKKLDS MLLNQTTHNP
SSSANVMSKV NERNRKLNST NIRKAEIKSR NTATVTDGGD PFSRLKTTTR IFYQDLINQE
NEKAINDAKA KYQELLDEKS KQEEKIAKST YREFGEMDKL IKSIDIDLEI VI
|
|---|
| |