Gene PICST_56833 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_56833 
Symbol 
ID4837915 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp558580 
End bp560010 
Gene Length1431 bp 
Protein Length477 aa 
Translation table12 
GC content39% 
IMG OID640389230 
Productpredicted protein 
Protein accessionXP_001383384 
Protein GI150864532 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.637444 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGTCTT CAGCTATAAA GGAAGCTCTC GCTATACTAC CATCAGATGA AAAGATCACG 
ATGTTTGTCC AGATCTTTCT AAATATCTGT GAAACCAATT ATTTCTACGC TATTCATCTG
GAAGTGTATG GAAAATTGGT CGATCTCTAC GAAGCAAGAC GGGTCGGAGA CTTGGAATAC
TTCTATCGAG AATGGCCCTT TTTGGTAATC GTTTTGTCAA TGCTTTCGGT GTCGGCTGGT
TTTGATTATA TTGGATCCAA ATTGCCCATA CCTCAAGAAG AATACAGTGT TAATCCCGGA
TACAATTACT ACTTCGCTTC AATGCCCTTT GTAGGTTTCT TATTAGACAG TAAAGCTATC
GAAGGTGCAC AAGCTCTTTT GATGTTGGGA GTGTTTTTGA CTACAAACAA GAATGAACAA
TTTGGATTGG CTGATGGAGG TTACTCATTC ATGGCTTTGG CTTTAGAGAT AGCTATTTCC
AATAAACTTT ATACCAAGGA CACATTTAGT CGTCTACCTG ATTACGAAGC TGAAGCCATG
AAGCGCCTTT GGTGGTCATG TTACACTTTA GAGAGAAGAC ATGGGTTCAA TCTTGGAAAA
CCAGAGTTAT TCCGAATCGA AGACATCACC GTTGGATTAC CAGAGTACAG TTTTGAACTA
AGGAATAACA GTGGCTCGTC AAACCATCTC AATCAAAGAG TAGTGATTCA GTTAACAATG
GTTTTCATCA AGCTAACTAA ACTAGAATAC ACTAAAACCA CCTCAGCTAA TAGAGTTGAA
ATCGATACAA AGATGATCAG AGCACTAGCT GACGATGTGG AAGAATGCAG AGCAAGCTTC
CCAGAATACG CTTTGATAGA AAACCTCGAT CCTTCAGCGG ACTTATATAG AGGTAACGTC
CATCTCCATT TGAACTACTA CCTTGCAAAG ATCTACATCG GAAAGCCGTT TTTGCTTTAC
AAAGTTGAGA ACCAACTGAA AATCCAAGAA AATAGCTACG AGACTGCTAT TGTCGATCAC
TTGTCTTCTA TTTGCATCGA TGCTGCTTTC TGCTCTATTG AGCTACTCAG CGTTCTTGAA
AAAAACTCTA AATTGGGGCA ATTTTCCTTT ACCGACCTCA ACTTTTGTAA TATTTCACTT
TTTGTCATAT TGGTGTATTT GAACATTGAC AAATCTGACA ATACACTTCT TTTCCTTCTG
AAAGGGTTAG GTATTCTTCG AACCCTTTCT CGTGGTTCAG CTACAGCAAA GCTGTCATTG
AACAAACTTC AAAAATTTAT TGACTTAGTC TCTGTAGTTG ACACAAAGAC TACAGATTCT
AGCCAAGCAC CGTATGCTCT TGTAGATCTT GAAGCCGGAG GAATGGGCTT TCCTGAACTT
CCTTCAGACA TTGATGGTTT TCTCCAGTTG GAGAATTTTG GGTTCATGGA C
 
Protein sequence
MLSSAIKEAL AILPSDEKIT MFVQIFLNIC ETNYFYAIHS EVYGKLVDLY EARRVGDLEY 
FYREWPFLVI VLSMLSVSAG FDYIGSKLPI PQEEYSVNPG YNYYFASMPF VGFLLDSKAI
EGAQALLMLG VFLTTNKNEQ FGLADGGYSF MALALEIAIS NKLYTKDTFS RLPDYEAEAM
KRLWWSCYTL ERRHGFNLGK PELFRIEDIT VGLPEYSFEL RNNSGSSNHL NQRVVIQLTM
VFIKLTKLEY TKTTSANRVE IDTKMIRALA DDVEECRASF PEYALIENLD PSADLYRGNV
HLHLNYYLAK IYIGKPFLLY KVENQSKIQE NSYETAIVDH LSSICIDAAF CSIELLSVLE
KNSKLGQFSF TDLNFCNISL FVILVYLNID KSDNTLLFLS KGLGILRTLS RGSATAKSSL
NKLQKFIDLV SVVDTKTTDS SQAPYALVDL EAGGMGFPEL PSDIDGFLQL ENFGFMD