| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_43653 |
|---|
| Symbol | |
|---|
| ID | 4838356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009043 |
|---|
| Strand | - |
|---|
| Start bp | 334113 |
|---|
| End bp | 334754 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640389671 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001383692 |
|---|
| Protein GI | 150864734 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1412] Uncharacterized proteins of PilT N-term./Vapc superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACAGA AGAGGGCCAA GTCGTACAAG CGTCAGATGA ACGTATATCT CCATACGTTC
AAGTTCAGAG AACCTTTCCA GACCATAGTA GATAGCGAAT TGGTTCTTAA CTGTGAGAAG
GCATCCTATG ACATTGTGAA AGGGTTGAAC AGAACAATTC AAGGCGAGAC CAAGCCAATG
ATAACTCAGT GTTGTATGCA AGCACTTTAC GACAGCAAAA ATCAGAGTGC CATTGATATT
GCCAAGCAGT TTGAGAGACG TAGATGTAAC CACAGAGAAG CTATAGATCC CAGCTTATGT
GTCCAGTCTA TTGTGAATAT TGAAGGTGTT AATAAGCACA GATATGTGGT GGCAGCTCAA
AATTATGAAT TGAGAGTTAA GTTGCGCAAA GTGCCTGGTG TGCCGTTGAT TTTCATGAAC
AGAGCCGTGA TGGTCATGGA GCCGATTTCT GAAGCTACTT CCAAGTACAG TGAAGCCTTT
GAAAGAAAGA AGCTCACGGC TGGTTTGAAT GATGCAAAGT ATACTGGTAT TGTGCCGAAG
GAATCAGAAG TGGAACTGAA GGAAGCTGTT CAACAGCCAG CTCCAAAGAA GAGAAAGGGA
CCCAAGGGTC CTAACCCATT GAGTATAAAG AAGAAGAAGA CA
|
|---|
| Protein sequence | MRQKRAKSYK RQMNVYLHTF KFREPFQTIV DSELVLNCEK ASYDIVKGLN RTIQGETKPM
ITQCCMQALY DSKNQSAIDI AKQFERRRCN HREAIDPSLC VQSIVNIEGV NKHRYVVAAQ
NYELRVKLRK VPGVPLIFMN RAVMVMEPIS EATSKYSEAF ERKKLTAGLN DAKYTGIVPK
ESEVESKEAV QQPAPKKRKG PKGPNPLSIK KKKT
|
|---|
| |