Gene PICST_42834 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_42834 
Symbol 
ID4838213 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp133015 
End bp133686 
Gene Length672 bp 
Protein Length223 aa 
Translation table12 
GC content45% 
IMG OID640389528 
Productpredicted protein 
Protein accessionXP_001383308 
Protein GI126133567 
COG category[R] General function prediction only 
COG ID[COG1896] Predicted hydrolases of HD superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0852302 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ACTACAGAAA ACATCTGGAA GCCTGACACT GCCGTTCCAG AACATATCCG TAAGCTCTTG 
GTACCTTCAG GTCCGAACCA CAGCGTTAAC TATATTCTTG CTTTTGTTCA GATAGTCAGA
CTCTTGAAAA CCCAGAAGAG AACTGGTTGG GTTGACCGTG GAATTCCGGC AGAAAAAGTC
GAAAGCATCA GTGACCACAT GTATCGGATG TCTATCATCT CGATGTTCAT ACCGAACGAG
AACATTGACA TCAGTAAGTG TGTGAAAATC GCCTTGGTGC ACGACATTGC TGAATCGTTG
GTAGGTGATA TCACTCCATT TGGAGGAGTC ACCAAGGCTG AAAAGCACCG TCGTGAATTG
GAATCGATTC AGTACTTGTC TGAGATCATC AAGCCATACA ATGAAAGGTT CTCCAAAGAA
ATCTTGGAGT TGTGGTTGGA CTACGAAGAA ATCAGGACCA TCGAAGCCAG GTACGTTAAG
GACATAGACA AGTACGAGAT GATCCAACAG GCTTGGGACT ATGAACAGGA CTTCGGCCTC
ACATATGATT TGAGTGAGTT CTATGATTCA AGAACCGCCA TAGTCTCGAA GGAAATCGGC
GAGTTATGTG ACGAGGTCAT CAGACAGAGA AACGAACACA TCGAGGCATT GAAATCGAAA
GCTTCCAGCT AG
 
Protein sequence
TTENIWKPDT AVPEHIRKLL VPSGPNHSVN YILAFVQIVR LLKTQKRTGW VDRGIPAEKV 
ESISDHMYRM SIISMFIPNE NIDISKCVKI ALVHDIAESL VGDITPFGGV TKAEKHRREL
ESIQYLSEII KPYNERFSKE ILELWLDYEE IRTIEARYVK DIDKYEMIQQ AWDYEQDFGL
TYDLSEFYDS RTAIVSKEIG ELCDEVIRQR NEHIEALKSK ASS