Gene PICST_30978 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_30978 
Symbol 
ID4838253 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp1417596 
End bp1418216 
Gene Length621 bp 
Protein Length206 aa 
Translation table12 
GC content50% 
IMG OID640389568 
Productpredicted protein 
Protein accessionXP_001383896 
Protein GI150864893 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.628694 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.245706 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCAACA CACCCACTAT GCTCTCTTGG CTTCTTCTTC CTCTGCCAGC TTTATTTTTG 
ATTCAGGTGC TTCTACCCAC ATTTGTAACA AGAGAAGTCT TTCTCTGGTT CTGTCACGAA
GAACCTCTCT CGATTGCCGG TCGTGGTACT CTTGTGTTTG ATCTCCAAGG TCAGAAGATT
CGTGTCTTTA ACGTTCTTTA TGTTCCTGAC TGTACTCAGA ATCTTCTTTC CATCCTGGCT
GTTACTACTA CGGGCGACAA ACTTGTTATC TCTCATGATG ACATTGTTCG CCTTAAGTAT
GGCCAACTTG CTACCAGAGA CCTGAGAAAT CTTTACTTGC TGTGTCTCAA AATTGTCCGC
CCCTCGACTG TCTCGCGGGC TAACCACTCT GCCTACTCGG CCCCCGCTCC TGTTACGGTC
GCTGCTCCTG CTGCGGACGC TGGTGTGGCA CCTGTTTCTG CCTCTGCTCT TGTTCATGCT
CGCCTTGGCC ACCCCTCTCC TACTGTCGTT CGACTGGCCT TGAAATATCC GAACATGCCT
CGCACGGTTG TTCACGACTC GATTTCATGT GAAGCATGTC TTAGCTCCAA GAGCACTCGG
GTGATTCGCA AGACGTGCTG A
 
Protein sequence
MFNTPTMLSW LLLPSPALFL IQVLLPTFVT REVFLWFCHE EPLSIAGRGT LVFDLQGQKI 
RVFNVLYVPD CTQNLLSISA VTTTGDKLVI SHDDIVRLKY GQLATRDSRN LYLSCLKIVR
PSTVSRANHS AYSAPAPVTV AAPAADAGVA PVSASALVHA RLGHPSPTVV RSALKYPNMP
RTVVHDSISC EACLSSKSTR VIRKTC