Gene PICST_30944 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_30944 
Symbol 
ID4837872 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp1330665 
End bp1331146 
Gene Length482 bp 
Protein Length106 aa 
Translation table12 
GC content41% 
IMG OID640389187 
Productpredicted protein 
Protein accessionXP_001383881 
Protein GI126134713 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1911] Ribosomal protein L30E 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.212607 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.515447 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTCCGTA TACTATTTTA ACGATGTCTG CCACGAACCA CTAGTCGAGT GAACTTTCAG 
AAATGAAAGG CACTTATACT TTATGAAACA TTAATGTAAT ACCATAATGA CTATAACGAT
TCAGCACATC ACACAGCCCT TAGGCTTCAT ACTAACATCT TCAGGCCCCA AAATCTAAGA
ACCAAGAAAA CATTAACGCC AAGTTAGGTT TAGTTATCAA GTCTGGTAAG TACACCCTTG
GTTACAAGTC CGTTGTCAAG TCCTTGAGAA CTGGTAAGGC CAAGTTGGTC ATCATTGCTG
GTAACACTCC AGTTTTGAGA AAGTCTGAAT TGGAATACTA CGCCATGTTG TCCAAGACCC
CAGTCTACTA CTTCCAAGGT GGTAACAACG AATTGGGTAC TGTCTGTGGT AAGTTGTTCA
GAGTCGGTAC CTTGTCTGTT TTGGACGCTG GTGACTCTGA CATCCTTACT TCTATTGCTT
AA
 
Protein sequence
MAPKSKNQEN INAKLGLVIK SGKYTLGYKS VVKSLRTGKA KLVIIAGNTP VLRKSELEYY 
AMLSKTPVYY FQGGNNELGT VCGKLFRVGT LSVLDAGDSD ILTSIA