Gene PICST_30848 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_30848 
Symbol 
ID4837754 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp1092205 
End bp1092741 
Gene Length537 bp 
Protein Length178 aa 
Translation table12 
GC content47% 
IMG OID640389069 
Productpredicted protein 
Protein accessionXP_001383836 
Protein GI126134623 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3805] Aromatic ring-cleaving dioxygenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.91244 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGTACG TTACCCATCT TCCACAAAAC GATCCCTCTG TAGCCACCAC CTCGGTTCAC 
GGACTTTCGT TCACATATCC GGTGCAATAC TACGATTTCC ATGTCTACTA CTATGCGCAT
AATGCAAAGT CGCTTACCGA GTCCGACAAC TTAAGAGCCA AGTTACTTGA AGACTTCCCT
GAAGATTCAG CCAATGGCTC CATCATCGTG AAGAAGTTGC CCGATGACAA GATCATTGGC
CCACATCCAA CGCAGTTCTG GGAGGCGGAT GTGAGAAGAC CTGAGGTGTT CATCAAGGTT
CTCAGTTGGT TTCAATTGTA CCATGGAAAT TTGTCAGTTC TTATTCACCC TCAAACGGGT
AACGATTTGG AAGACCACAC CAACAGTGCC TTGTGGTTGG GCCATAGATT GCCTCTACTT
GTAGACGTGT TTCCTGGTAA TTCGGACGGT GCCATTCCTG AGTTTGGAGT CAAGAGAGGA
GCCAGAATCC AACCCCAGGA TTTCGACTCG CACAAGACAG TGATAAACAA GAAATAG
 
Protein sequence
MEYVTHLPQN DPSVATTSVH GLSFTYPVQY YDFHVYYYAH NAKSLTESDN LRAKLLEDFP 
EDSANGSIIV KKLPDDKIIG PHPTQFWEAD VRRPEVFIKV LSWFQLYHGN LSVLIHPQTG
NDLEDHTNSA LWLGHRLPLL VDVFPGNSDG AIPEFGVKRG ARIQPQDFDS HKTVINKK