| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_30814 |
|---|
| Symbol | |
|---|
| ID | 4837787 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009043 |
|---|
| Strand | + |
|---|
| Start bp | 1010677 |
|---|
| End bp | 1012492 |
|---|
| Gene Length | 1816 bp |
|---|
| Protein Length | 503 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640389102 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001383479 |
|---|
| Protein GI | 150864596 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.018903 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.204154 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAGTT ATGCCCCTGG CGGACACTCG TTGAAAGACA AATACAAAGA AGGCGGAAAG
GCCAAGGAGT TGTTTTCCAA CCACGATTCG TTCTTATTCT CCAAAGAGTA CTTGGAAAAT
GTGTTGGACG TCTCAAACGA CATGAAAGAC AGATTGCTGA ATTCGCACAA GAACTATGTC
GACGTACAGA TGAAGAAATT GATAGAGGTA TACGGCTTGG ACACATTTGG CAACATTTTG
AAAACAGACA CCGAGTGGGA CGACTACCAC GGCAGTTCTG GCTATGTATT GGTAGGAGGT
GGAAAGTACA GTTTCTTGTC GTATCTTGTA ATCAGACAAA TCCGAGCTAC TGGAGCTAAG
AAACCAATCG AGTTGTTCAT TCCAAGTAAG TTAGAATACG AAAAGGCTTT CTGTGAGACG
ATTTTGCCTA AGTATAATGC CAGATGTAAC GTATTCGATA CGAAGTTGGC TGGTAACCTC
AAGAAATCTT TCAATCTTGG AGGTTACCAG TACAAGATGT TGGCTCTTAT GAGCTCCTCC
TTCGAAAGGG TAATGTATAT TGACTCTGAC AACTTCCCTA CTAGAAACAT GGATTATTTA
TTCGACTCGG AGTTGTTCAA CGAGAAGGGG TTGATCTTGT GGCCCGATGC TTGGGCAAGA
ACGACTAATC CTGTCTTCTA CGAAATAGCC GGAATCAAAG TCAAGGAGAA CAAGCTCAGA
TACTCCACCT ACGATAAGAA ACAAGCCGAA AAGGAAGGAA AGCCATTAAA GCCATTGTCT
GAATTTAGTT TCAAAGACTC ATGGTTCCAC GATTTCGAGG GAGCACTTCC GGATCCAACT
TCGGAAACAG GCATGCTTTT GATTAATAGA ACGTCCCATC TCAAGACATT ACTCTTGGCC
TTATACTACA ATGTTTATGG ACCATTCTAC TACTATCCCT TGTTGACACA GGGTTCTGCA
GGAGAAGGTG ATAAAGAGAC GTTTATTGCG GCAGCCACTG CCATGCAGCA GACATATTTC
CAAACATTGA AACAATTCAA ATGGACTGGC TATGTTTCAC AAAATGATAA CAAATTCACT
TCGAAGGCTT TGGCGCACTA TGATCCCATT CAATCACAGG ATACGTCGAA AGATGACATT
GATATCGTCT TCATGCATTT GTCGTATCCT AAGTACTATC CTAACTGGCT TGTGGATAAC
CATGACTTGG TCTATCGTGA AAGTGGCGAC CATATTAGAA TGTACGAGTC GATCTATGAG
AACGTTGGCT ACGATTTTGA TTTGCGCGTG TTACAATTCT TCACTCAGGC TATTTGTCCC
AACTACTACG ATTCTCAAAC ATCGAAGGCC GTGGATGGAG AAGATATTGA TATGATGGAA
GAATACATGG GTGACTACCT AGCTTATGTA GACGATGACG AAGAGCACAA CATCAACAGA
TGTAAGGATG TTTTCATTCC TCACTTGCAA TGGTTGAAGG AAACCACCAA GTTCAAAGAA
GGGCTGGTGA TAGTATAGTT ACAATAAAGA GACCTACTCA TATATAATGT CATAAATTAA
TCGCTCCCTT ACAATTGACT TTTGCATCGC TTTTTAATTA TAATGAATGT AGTTCCACAG
CAGTTAATGT AGAATAGTGA ACAGGAAAAG ATTCAGTGGA ATTTCAGAAC TCTTCCCAGG
GTACCAAACA AGATCTACCT AAATGATTTT GCCATCACAT TATTCTCACT CCATTAAACG
GCATCGGAAA GTAGTGATGC ACATAAAAGC AACCTGAAAT GGTGTCGAAT GTAGCTTCCT
TTCATCACTG TCGTAA
|
|---|
| Protein sequence | MESYAPGGHS LKDKYKEGGK AKELFSNHDS FLFSKEYLEN VLDVSNDMKD RLSNSHKNYV
DVQMKKLIEV YGLDTFGNIL KTDTEWDDYH GSSGYVLVGG GKYSFLSYLV IRQIRATGAK
KPIELFIPSK LEYEKAFCET ILPKYNARCN VFDTKLAGNL KKSFNLGGYQ YKMLALMSSS
FERVMYIDSD NFPTRNMDYL FDSELFNEKG LILWPDAWAR TTNPVFYEIA GIKVKENKLR
YSTYDKKQAE KEGKPLKPLS EFSFKDSWFH DFEGALPDPT SETGMLLINR TSHLKTLLLA
LYYNVYGPFY YYPLLTQGSA GEGDKETFIA AATAMQQTYF QTLKQFKWTG YVSQNDNKFT
SKALAHYDPI QSQDTSKDDI DIVFMHLSYP KYYPNWLVDN HDLVYRESGD HIRMYESIYE
NVGYDFDLRV LQFFTQAICP NYYDSQTSKA VDGEDIDMME EYMGDYLAYV DDDEEHNINR
CKDVFIPHLQ WLKETTNFLS SSS
|
|---|
| |