Gene PICST_30616 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_30616 
Symbol 
ID4838145 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp516492 
End bp517220 
Gene Length729 bp 
Protein Length242 aa 
Translation table12 
GC content44% 
IMG OID640389460 
Productpredicted protein 
Protein accessionXP_001383734 
Protein GI150864765 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0141932 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.411701 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATATTA TCGACTTCGA CGCTACTTTA GATGAGCTTG ACATCCGATT CTTGGACCCT 
ACCAATGACT TAATATCAGG CAACTCTGTG GAAACACTGG CTGTTTTCGA CGACAAACAA
TTTCTATTCG CTAGCTTGGC GACTCCATTC AGCTGTCAAC CATTCAAATT CCTCGAGAGT
GACGGCGATG GTAGCATTTC TCCCACAAAA CTCGTCAACC CCCGAATGAG AAACTCTTTC
AGTAAGCAAC TGGCTTTGGC ATCTCCCTTA TTGGACAACA CCGAATTTAG TTTCGGGGAT
ATTTCACCAA CACAAATAGT AAATGGAAAA GGCGATGATC TCGACCATTC AATTCTAGAC
GACAATGAAG TTGACGAAGA AGATGAGTTG ATCTCACCGC ATTCGCTAGT TAAGCCCAAG
AAGAAATCAT CCATCACAAA ATATAAGATC AACAAATCGT TCACAACTTC TCCCACAATG
AAGGCGCCAT TGAAGCCTAC GGTGACAATT GCTTCTATAG ACACATATTC TCAACTTCAG
AAGAAAAATG CCATTGAAGG TCATAAGCGG CGAGCTTCCC GGGAATTGCG AGCCAATTCT
ACCCCTAGTA TATTCGGAAC CGATGCCAAC CGAAAACTAT ACCCTGTTCT GGTGGGCAAT
CCATTCTATC GCCCTATCAA GTTCAGATCC AGCACCTCCA TTCCCACGTT AGAAAGAAAG
GAATGGTAG
 
Protein sequence
MNIIDFDATL DELDIRFLDP TNDLISGNSV ETSAVFDDKQ FLFASLATPF SCQPFKFLES 
DGDGSISPTK LVNPRMRNSF SKQSALASPL LDNTEFSFGD ISPTQIVNGK GDDLDHSILD
DNEVDEEDEL ISPHSLVKPK KKSSITKYKI NKSFTTSPTM KAPLKPTVTI ASIDTYSQLQ
KKNAIEGHKR RASRELRANS TPSIFGTDAN RKLYPVSVGN PFYRPIKFRS STSIPTLERK
EW