Gene PICST_30567 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_30567 
Symbol 
ID4838287 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp402610 
End bp403437 
Gene Length828 bp 
Protein Length275 aa 
Translation table12 
GC content44% 
IMG OID640389602 
Productpredicted protein 
Protein accessionXP_001383354 
Protein GI150864512 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.800594 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.92709 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCCTC CTACCAGACC TACCAGTGCC GGGGCTAGAC TCCAGAAACT TGCATTAACA 
CAACAGTTCT ACTGGTTCCT TGGTCATGTG ATGGCCGTTC TCTTTTTTGC AGTTTCCACC
ATCAGTTCGT TTATCTTTCC TCGTTCATCG CTTAAGTACT ACAGGTTTTC GCTTTTATCG
ATCCTCGTGA CTTACGTCAT TGTGATCAAG CAGATTTACC TTCGTAAGCT TCTGACTGTG
ACAGCCACTC GTCTCATTCG TGACGAAAAC GTCCAGTACT TTGTTCTTGC TGGAGTGTTC
TACTTGGCTT CCTTCAAGAT AGGCGTCGTG GCTGGTTCGC TTTACTCATT TGCCATTTTT
GCTGTGTTTC ACATTCTCAC ATACTTTCAG AACAACTTGT TGTCGATTGT ATTGGCCAAT
CCTCAGGCTC AACAGCAGGT GAATGCCACT ATCAACCAGT TTACCACTAA CTACAACCAG
CAGGCACTTA TAGTTGCAGC CAATGCTGAA GCCATGCTTC TCGTGTTGAA CGTTTTCCTG
GTTTTCCTGG CATTTTTGTT CAACTTGGTG CTCCAACGTG ACATTGTCTA CTTCTTGGTC
AAGTTATGGG TAGCTGCTAT AACTGTAGTG TTTGTAAAGT TCAGATTCGA CTCTAACCAG
TACACCAAGC TTGTAATCCA ACAGTTTGAT CTCAAGATCA GCGAATTGTT GGCAAGATTC
AACAGTACAG CCTTGAACAA CTTGTACAAT GTCTCGTTCA AGAGCCAATT CCTTCCTCAC
TACATTGCAC CTATTCAAGT GCCCAAGGAA AACATCAAAA AGACATGA
 
Protein sequence
MAPPTRPTSA GARLQKLALT QQFYWFLGHV MAVLFFAVST ISSFIFPRSS LKYYRFSLLS 
ILVTYVIVIK QIYLRKLSTV TATRLIRDEN VQYFVLAGVF YLASFKIGVV AGSLYSFAIF
AVFHILTYFQ NNLLSIVLAN PQAQQQVNAT INQFTTNYNQ QALIVAANAE AMLLVLNVFS
VFSAFLFNLV LQRDIVYFLV KLWVAAITVV FVKFRFDSNQ YTKLVIQQFD LKISELLARF
NSTALNNLYN VSFKSQFLPH YIAPIQVPKE NIKKT