Gene PICST_30528 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_30528 
Symbol 
ID4837954 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp289711 
End bp290760 
Gene Length1050 bp 
Protein Length349 aa 
Translation table12 
GC content40% 
IMG OID640389269 
Productpredicted protein 
Protein accessionXP_001383336 
Protein GI150864499 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTTCTA TACTAAATCT ACCCCATGAG GTGATGGTGA AAGTGTTCAA GTACTTGACG 
CCGAGCGAGA CCAGTCAGAT GATCAAGAAG TTGAAATCGG ATAAAGAACA CCGAGGTCGG
CTTGATGATC TTGTCATACG ACTCTTGTAC CAGCGTCTTT TCAATGGGAA GTTGATGATT
ATCAACGACA AATCGAACGA GACTATTGAA TACGACACTA TGCTCACTAT AGATTCGTTT
GAAGAGCGCT TTTTGGTACA TAACTACGAG AACTTGTTGT TCCAGGAGAT AAGACCAAAC
TATGTAGAGG TGAAATTCAC CAGACAGGCC AATGATTACA TGAATTTCAT AGGAAATTTG
TACAAGTTCT TCAGTCTCTT GTCTCGAGAG GAAAATGTGC AGATGCTCAA GTACTTCGAG
ACGAAAATCT TGCAACTTGA CTTTTACACT GACGGAAATC TTGTATTGAT AGAGAATCCA
ACATCATTAT CCACTATCAT CATCAAGATA TTGATCAGTT TGTCTAGCAA CAAGGACCTC
TTGGGAAAGA TCAAACGGTT CACTATAAAG TCGACCGATA TCGGAAATCT TTACGTTTCC
CAATGGAGTC AGCTATTCCG ACGTTTTATC AATTTGCATA CACTAGATCT ATCCAACGAC
ATAATTCACT CTGATTATGA TGATTGCAGA GATGTTTTAG GTTATTCTTT CAAGTTTCCA
GCCAGGCTTA AGATACTAGT GCTAGATAAC AATGTGTTGC GATATGTTTC GGTTGCAATG
ATTGCTAGTC TTCCACATAG CCTAGAAGTG TTACTGTTGA GCCACAATAA AATCGTATCT
GTAGAACCAG TACGTCTATC CTCAAAGTTA CCGAATCTCC GCTATTTGAA TCTCGACTAT
AACGGCCGCT TACTGTTTTT GGACCCTGTC ATTTTCCGGG GCATTAGGCG AGACTTCAGA
CTTCTGTTAA GGGGCACCAG TTTTGAGGAT GCTGATTTTT CGCATTTGGC AAGAGCGACT
AGCGAGATCG GATTTACCAT TATAGTGTAA
 
Protein sequence
MVSILNLPHE VMVKVFKYLT PSETSQMIKK LKSDKEHRGR LDDLVIRLLY QRLFNGKLMI 
INDKSNETIE YDTMLTIDSF EERFLVHNYE NLLFQEIRPN YVEVKFTRQA NDYMNFIGNL
YKFFSLLSRE ENVQMLKYFE TKILQLDFYT DGNLVLIENP TSLSTIIIKI LISLSSNKDL
LGKIKRFTIK STDIGNLYVS QWSQLFRRFI NLHTLDLSND IIHSDYDDCR DVLGYSFKFP
ARLKILVLDN NVLRYVSVAM IASLPHSLEV LSLSHNKIVS VEPVRLSSKL PNLRYLNLDY
NGRLSFLDPV IFRGIRRDFR LSLRGTSFED ADFSHLARAT SEIGFTIIV