Gene PICST_13887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_13887 
Symbol 
ID4838291 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009043 
Strand
Start bp385567 
End bp385857 
Gene Length291 bp 
Protein Length97 aa 
Translation table12 
GC content46% 
IMG OID640389606 
Productpredicted protein 
Protein accessionXP_001383351 
Protein GI126133653 
COG category[K] Transcription 
COG ID[COG1958] Small nuclear ribonucleoprotein (snRNP) homolog 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0943829 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GCTGGTATTC CTGTCAGATT GCTTAACGAG GCCCAGGGCC ACGTGATCTC GCTCGAGCTT 
ACCACTGGTG ATACATACCG AGGAAAGCTC TTGGAAAACG AAGATAACAT GAATTTGTCA
CTTTACGATG TAGTGATAAC GAAAGGCAGA ACGGGTGCTA CTTCATACAT GAACCAGGTG
TTTGTGAGAG GGTCGATGAT TCGCTTCATC ACTGTACCGG ATATATTGAA GAATGCGCCT
ATGTTCTTTA TGAAGCCAGG CGATAAACCT AAACCTCCTG TGAGAGGACC T
 
Protein sequence
AGIPVRLLNE AQGHVISLEL TTGDTYRGKL LENEDNMNLS LYDVVITKGR TGATSYMNQV 
FVRGSMIRFI TVPDILKNAP MFFMKPGDKP KPPVRGP