| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_87852 |
|---|
| Symbol | |
|---|
| ID | 4837462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | - |
|---|
| Start bp | 2174447 |
|---|
| End bp | 2175987 |
|---|
| Gene Length | 1541 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640388777 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001383179 |
|---|
| Protein GI | 150864390 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG5095] Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.142846 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.141924 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTCCA GTCTGAAGAT ACCCTTGTCG TACTCGTTGT GGTCTCCCCA TGACACCGTC
AAAGATGCTG CGGAGCTGCT CAGTATCAAT TTGCCAGAGG AGGCAGCCAA GAATCTTGCC
ATGGATGTCG AGTACCGTAT CCATGAAATC TTGGAAACAG CCATTAAATT CATGAGACAC
TCGAAAAGAA AGTTGCTCAT GACTTCAGAC ATAAGTAACG CCTTAAAAGT ATTGAATATT
GAGCCCCTTT ATGGCTACGA CAATTCGCAA CCGTTGGTTT TCAAGGAAGC CTTGGTTGGT
GCTGGAGGAC AGACTTTGTA TTATATAGAT GATAATGAGA TTGAACTTGA AAAGTTGATC
AACCAGGAAT TACCAAAAGT GCCTCGTCAA ACCACCTTTA CTGCTCATTG GCTTGCTATT
GAAGGAGTCC AACCAATGGT GGCGCAGAAT CCTCTTCCTG CCGAAATCAA GAGTCTCCCT
CCGATAATAA GAGGTGCCAC TTCGTCCATT CTTGGAAACG ATATTTTATC GCTTGGCCAA
AACGGCGAAA ACAAGGACTC AGCACAAGGA TCTGCTGCTA CCAAAGACAA GAAGGCCACC
GAGAAGCAAT CAGAAGTCAA GCCGTTGGTC AAACACGTAT TGTCGAAGGA ACTCAAGTTG
TATTTTGACA AGGTTGTAGA AGTTCTCATT TCGACAGATC CAGAAAAGGA GAACTTGAAG
GTAGCTGCCT TGAACTCGTT GAAGAATGAC CCGGGTTTGC ACCAGTTGGT GCCTTATTTC
ATCCAATTCG TGGCCGAACA GATCACAAAC CAGTTGAGGA ACATTGATAT CTTGTCCACA
ATGTTGGAAG TGATTTCTGC TCTCGCTGAT AACAAGACTA TTTTCCTCGA TCCTTATGTC
CATGCTCTTA TGCCTTGTAT CTTGACGTTG TTATTGGCTA AGAGAATAGG TCCTGTGATC
AGAGAAACCT CCTCCAAAGA GTCTCAGGAC ACGTTGAAAA CACAATTGGC CGTTAGAGAA
TTCGCTGCCT TTTTGCTAGA ACACATTATC AAGGTTTACG GCTCTTCGTA CTCGACTTTG
AGACCCAGAG TGACAAGAAC GTTATTGCGT GCGTTGTTAG ATTCTACAAA ACCAGTAGGT
ACGCATTATG GTGCCCTTTT GGGGTTGAAG AATATGGGCA CAGAAGTTGT CAAGTTGGTC
TTGATAGGCA ACTTGAAAGT TTGGTGCAAG CTGGTAGTTG AGAACAGCGA TAAGACCGAC
TTTGAAAAGG ATATCTTGCT AAATGAATCG CTAGAAATTT TGGATAGCCT TAAAGTGGAA
TTACCCCAAG ATGAAGAGTC TATGGATACA GACTCCGGGT TTTCAGAAGA AATTAAGAAC
AAGTTGAAAG ACAGGATTGG TGATACTCTC GCCGACTTAG TTTTGCAACA CAGGGATGCA
AAAGACATTG TCAGAGGTCT ATTCTTTGGC GAAGTTGTCG TCTAGAACGT GTACAACAAT
TCAAAATAAT GATGTATATT AATGTATGAA TAGTAACTAT T
|
|---|
| Protein sequence | MESSSKIPLS YSLWSPHDTV KDAAESLSIN LPEEAAKNLA MDVEYRIHEI LETAIKFMRH
SKRKLLMTSD ISNALKVLNI EPLYGYDNSQ PLVFKEALVG AGGQTLYYID DNEIELEKLI
NQELPKVPRQ TTFTAHWLAI EGVQPMVAQN PLPAEIKSLP PIIRGATSSI LGNDILSLGQ
NGENKDSAQG SAATKDKKAT EKQSEVKPLV KHVLSKELKL YFDKVVEVLI STDPEKENLK
VAALNSLKND PGLHQLVPYF IQFVAEQITN QLRNIDILST MLEVISALAD NKTIFLDPYV
HALMPCILTL LLAKRIGPVI RETSSKESQD TLKTQLAVRE FAAFLLEHII KVYGSSYSTL
RPRVTRTLLR ALLDSTKPVG THYGALLGLK NMGTEVVKLV LIGNLKVWCK SVVENSDKTD
FEKDILLNES LEILDSLKVE LPQDEESMDT DSGFSEEIKN KLKDRIGDTL ADLVLQHRDA
KDIVRGLFFG EVVV
|
|---|
| |