Gene PICST_87428 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_87428 
SymbolGLT1 
ID4837152 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp2577990 
End bp2585414 
Gene Length7425 bp 
Protein Length2126 aa 
Translation table12 
GC content45% 
IMG OID640388467 
Productglutamate synthase 
Protein accessionXP_001382727 
Protein GI150864046 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG0069] Glutamate synthase domain 2
[COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases 
TIGRFAM ID[TIGR01317] glutamate synthases, NADH/NADPH, small subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ACCGAAACTA TCTTTGTTTT AAGTGTAATC GTGCTCCCGT CTGTGTAAAG CTAGCACTTC 
CATCCCAGAC CTCTTTTTTC GCTAGTCTGA ATTGTCCCCA TAGAGTATAC CGTCCATATA
TCTCTATTCA CTATTCAAGA TTGCCTGGAG CCGTTGATTA ATATTATCGT TAGACATTAG
AGCGTCCATT GACCACTACT ACCACATACT ACATTCCCTT TAAAACATAT CCAAAAGCAA
AAGATTTAGA GTAAGTACTG ATTTTTGAGT GAAGAGATGA AAGAAGTGAA AATGGGCCCA
CCAGCCAACG AGGATTGATA CCACTGGCCA TTGACTACAG AGAAGCATGT CCTCACTAGC
AGGGTAACAC CAGGCGCAGT CTGGGATGCC AGCTCTATCC AGTGTCTCCA CCGTTCCTCT
ACTTCCTCTG TACGGTGTCT ACTTTTTAGT GAAAAAAGTA CTTGAATATT CACATTTTTA
ATTTCGCATT TGCACAGATT GCCACTTCCT TGATAAGCAG CATATTCCAT GTCGTCGAAA
TCTTGTCTTC CAACGTCCTC TACGTCCAAT TCAAAGTGTT CAGCTGTCAT GTTCCCCACC
GAAGATCAAT GAATCATCTG TCTGCCGGTA TCTAAGTCTG CGGCGGTGCG GCAGAGATGA
CTATTGTATT CCTGGCTATT ACCATTGAGA TTATTTTCAT TGGGCAGATA ACAGGAGAAA
ATTTTCCTTT CGCACTGCAA CCTTGGAGCT ACAGCAACCG AATGATAATT AGGAGTGCGA
TAAGAAATCC AATACTGCTC GGTGCTGATA GTGGCCGCTT ACTATAGTCA TCTAGACAGT
CGATGGACGT TCTCGATTGC GACTGCCATT GAACTGGCTG AACTTCAAAC TGCATTTTTT
CGGACCGGAC TTTTTTTGCA TTTCCCAATT AGGCTGAATT TTTCACTCCG ATATGGGCTC
GTACATTCTC TCAGCCTAGA AACATATTCT TTCATTAAAT CTTTTTACCA TTTGACATAC
ATATACTAAC ATCAAAATAG TTCAATGAGT TCCTACTTGC CTCAAGAGGA ATTCCAAACC
AATATCTACC AATACGATGA AACTCCTGAG AATACATCAT GGGCTTCTGC ATTACCAGTA
GCCAAGGGAT TGTACAACCC AGAATACGAA AAAGATGCCT GTGGTGTCGG TTTCACTTGT
CATTTGAAGG GTGAAGCCTC CCATAAAATC ATCTCCGACT GCAGAAACTT GTTGTGCAAC
ATGACCCACA GAGGTGGTGA GTTGAACCCA AAAGATGGTG ATGGTGCTGG TTTATTGTCT
TCCATTCCTC ACAAGTTCTT GAAGCGTGAA TTCAAATACC ACTGCAACAT TGACTTGCCT
CCTTTGGGCC AATATGGTAC CGGTAACATC TTCTTCAAGA AGGATGATGC CGTCTTTGAG
AAGTCCAAGT CCACTTTCGA GAGCATTGCG GACTCCCTTG GCTTGAAGGT CTTGGGCTGG
AGAAAAGTCC CCCACGACTC GTCCATCTTG GGTCCTGCTT CTTTGTCCAG AGAACCATAC
ATCTTGCAGC CAACCGTTGT TTTGTCTGAA TTGGCTGGTC AAAACGACAT TGCAGATGAT
GTGTTTGTTT CCAAGTACCA AAAGGATTTT GAAAAGAAGT TGTACATCTT AAGAAAGCAG
TCGTCTCACT CCATTGGCTT GCACAACTGG TTCTACATTT GTTCCCTTTC CAACAAGACC
ATTGTATACA AAGGTCAATT GGCTCCCAAC CAAGTCTACG CTTACTACCA CGATTTGGTC
AACGCCGACT ATGAATGTCA CTTTGCCCTT GTCCACTCCC GTTTCTCCAC CAATACTTTC
CCATCGTGGG ACAGAGCTCA ACCTTTGAGA TTGGCTGCTC ATAATGGTGA AATCAATACC
TTGAGAGGTA ACAAGAACTG GATGAGAGCA AAGGAAGGTG TCATGAGCTC GAAGTTGTTT
GGTGAGGAAA TTGACAAGTT GTTCCCTATC ATCGAAGAAG GAGGTTCTGA CTCCGCTGCT
TTTGACAACG TCTTGGAATT GCTTACCGTC AACGGAGTGT TGTCGTTGCC AGAAGCCGTT
ATGTTGATGA TTCCAGAAGC TTGGCAAAAC GATACTCACA TCGATCCCAA GAAGAAGGCT
TTCTACGAAT GGGCCGCTTG TTTAATGGAA CCATGGGACG GACCAGCTTT GTTCACATTT
GCTGACGACA GATACTGTGG TGCCAACTTG GATCGTAATG GTTTGAGACC ATGTCGTTAC
TACGTCACCG ACGATGACCG TATCATTTGT GCATCTGAAG TTGGTGTAAT TGAAATTGAA
CCCGAAAAGA TTTTGCAGAA GGGCAGATTG CAACCGGGTA GAATGTTGTT GGTTGACACC
AAAGAAGGAA GAATCGTGGA CGACCGTGAG TTGAAGAATA ACGTCGCTTC CAGATTTGAC
TTCAAGTCAT GGGTTCTTGG TAACATGATC TCGTTGGGCG ACTTGATTGA AAAGTTACAG
GCCAGAGAAA TCGACTTGTC GGACAAAGTC AGCGACACTT CCTACAGCGT CCAATCAGAC
CCTCGTCTTG TTGCCTTTGG TTACTCTCAC GAACAGGCTT CGTTAGTGTT GGCGCCAATG
GCTGAAGGAA ATGAAGCTCT TGGTTCCATG GGTAACGACA ATGCCTTAGC TTGTATCTCT
GAGCAACCAA AATTGTTATA CGAATACTTC CGTCAATTGT TCGCCCAAGT CACCAACCCA
CCTATTGATC CCATTAGAGA AGAAATTGTC ATGTCCTTGG AATGTTACGT TGGTCCTCAA
GGTAACTTGT TAGAAATGAA GCCAGACCAA TGTAATCGTT TGTTGTTGAA GTCGCCTGTT
TTGTCGAACT CAGAACTTAA CGCTATCAGA AATATTGAAA CGGTTTACCC TAAATGGTCG
GTTACCCAGA TTGACATAAC TTTTGACAAG CCTGAAGGTA TTCAAGGTTA CGTCAACACC
ATTGACAGAA TCTGCCAACA GGCTTCGAAG GCTATCGCTG ACAACAAGAA GATTATTATC
TTGAGTGACA AGGCTACTTC TGCAACCAGA GTCCCTATCT CTGCTTTGAT TGCCACTGGT
GCTGTGCACC ACCACTTGGT TAGACAAAAG CAGCGTTCCA AGGTGGCTCT TATTATTGAA
ACCGCTGAAG CTAGAGAGGT GCACCATGCT TGTTGTTTGG TTGGATACGG TATCGATGGT
ATCAACCCTT ACTTGGCCAT CGAGACTCTT ATCAGAATGA GGGAAGAAAA TTTGTTGAAG
AACGAAGCAC TCACTCCTGA AAAGATAATC CACAACTATA AGGATGCTAT CGACCACGGT
ATCTTGAAGG TTATGTCTAA GATGGGTATC TCTACCTTGG CCTCCTACAA GGGTGCACAA
ATTTTCGAAG CTCTTGGTAT CGACAACTCT GTCATTGACA GATGTTTCGC TGGTACTGCT
TCCAGAATTA AGGGTGTCAC TTTCGAGTAC ATCGCTCAAG ACGCCTTCTC AATGCACGAA
AGAGGTTTCC CAAGCAGAGA CACCATCAAG CCTGTTGGTC TTCCAGAAAC TGGCGAATAC
CATTGGAGAG ATGGCGGTGA TGCACACGTC AACGAACCAG CTGCTATTGC TTCTCTTCAA
GACGCTGTCA AGAACAAGAA TGAAAGAGCC TACGAAGCCT ACTGTAAGAA GGAGCACGAA
GCTATTAGAA ACTGTACCTT AAGAGGATTG CTTGACTTTG ATGTTGATGC CAGCACTTCC
GTTCCAATTG ATCAGGTCGA ACCATGGACT GAAATTGTCC GTCGTTTCTT CACAGGTGCC
ATGTCTTACG GTTCCATTTC CATGGAAGCT CACTCAACTT TGGCTGTTGC CATGAACAGA
TTGGGTGGTA AGTCGAACAC TGGTGAAGGT GGAGAAGACT CTGCCAGATC TATTGTTAGC
GAAAATGGTG ACACGATGCG TTCTGCTATC AAGCAAATTG CTTCAGGCCG TTTTGGAGTT
ACTTCCTATT ATTTGGCTGA TGCCGACGAG TTGCAAATCA AAATGGCTCA AGGTGCTAAA
CCCGGTGAAG GTGGGGAATT ACCTGGCCAC AAGGTCAGTG CCCAGATTGG TAAGACTAGA
CACTCTACTC CTGGTGTTGG TTTGATATCT CCACCCCCCC ATCACGATAT CTACTCTATT
GAGGATTTAA AGCAATTGTT GTACGATTTG AAGTGTGCCA ACCCAAGAGC TCGTACTTCT
GTGAAGTTGG TTTCTGAAGT CGGTGTTGGT ATTGTTGCTG CTGGTGTAGC AAAGGCCGGT
TCCGAAAACA TCTTGGTTTC TGGTGGTGAT GGTGGTACGG GTGCTGCCAA GCTTACTTCT
ATCAAGTACG CTGGACTTCC ATGGGAACTT GGTTTGGCTG AATCGCACCA GACTTTGGTC
TTGAACGACT TGAGAGGCAG AGTTATCTTG CAAACTGACG GTCAAATTAA GACTGGTCGT
GATATTGCCA TTGCCTGTTT GCTTGGTGCC GAAGAGTGGG GGTTTGCAAC AACTCCTTTG
ATCGCCATGG GCTGTATCAT GATGAGGAAA TGCCAGACCA ATGCCTGCCC TGTTGGCATT
GCTACTCAAG ACCCAGAGCT TCGTAAAAAG TTTGAAGGTA CTCCTGAGCA CGTCATCAAC
TTCTTCTACT ACTTGGCCAA CGACTTGAGA AACATCATGG CAAAATTGGG TTACAGAACC
ATCAACGAGA TGGTGGGTAG AACCGAGAGA TTGAAGGTAA GAGAAGACTT CAGAAACACA
AAGAACGCCA ATATCGACTT GTCGCCAATC TTGACACCAG CCCATACCAT TAGACCTGGT
GTTGCTACCT ACTGTGTCAG AAAACAAGAT CACAGATTGC ACGTCAGAAT TGACAACAAG
TTGATCGACG AATCTGAGTT GACTTTAGCC AAGGGTTTAC CAGTCACCAT TGACTGTGAT
GTCGTCAACA CTGACAGAAC CTTGGGTACC ACTTTGTCTT ACCGTGTTTC CAAGACTTTT
GGTGAAAACG GTTTGCCTCA TGATACTATT CATGTCAATG CTAAGGGTTC TGCCGGTCAA
TCATTCGGTG CCTTCTTGGC TGCTGGTATC ACTTTGGAGT TAGAAGGTGA CGCCAACGAT
TACATTGGTA AGGGTTTGTC TGGTGGTAGA ATCATTGTCT ACCCTCCAAA GGAATCCAAG
TTCAAAGCGG AAGACCAGAT TATTGCAGGT AACACCGCCT TCTTTGGTGC CACTTCCGGT
TCTGCGTTCA TCAGAGGTGT AGCTGCTGAA AGATTTGCTG TTAGAAACTC TGGTGCTACC
ATTGTGACTG AAGGCACTGG TGACCATGGT TGTGAGTACA TGTCCGGTGG TAGAGTTGTC
GTTTTGGGTG GTACTGGAAG AAACTTTGCT GCAGGTATGT GCGGTGGTAT TGCTTATGTT
TTAGACATGG CTCAAGACTT CAATAAGAGA GTTAACACTC ATACCGTGGA ATTATCTCAA
GTCACTGAAC CATCTGAAAT TGCTTTCTTA AGAGGTTTGA TCGAAGACCA CCGTCACTAC
ACCAATTCAG AGGTAGCTGA TCGTATCTTG AACGACTTCA ACAGAATCTT GCCACGTTTT
GTTAAGGTTT TGCCTTTCGA CTACAAGAAG GTTCTTGAGA AGGAAAAGCA AAAGGCCGAG
GAAGCTAAGA AGAACGAGTT AAATACATTC TTTAAGCTGA TCAAGGAAGA CCCAGAAGCC
GATGTCACGA ACGGTGAGGC TGCCAAGATC AAGAAGGGGC ATGTTCATAT CACCTCCAAG
GCTAAAGATG GCCACAAGGA ACCAAAGGTG TTGGATGTTG AAGACACTAT CTTGGACACC
GAAGTTGAAA AGAAGGCTCC AGTTAAGTTG GACAAGCTTA AAGGCTTCAT GAAGTACAAG
CGTCGTAACG AAAAGTATAG AGACGCGAAG GCCAGAGCCA AGGACTGGAA CGAAATGACT
TCCAGATTGT CCAAGGATGA GTTAAAACAT GAGACAGCTA GATGTATGGA CTGTGGTGTT
CCCTTCTGTA CTTCGGACAC TGGATGTCCT ATTTCCAATG TCATCCCGAA GTGGAATGAG
TTGGTCTTTC AGGACAGATG GTACGATGCT TTGCAGAGAT TGTTGATGAC CAACAATTTC
CCTGAATTCA CTGGTAGAAT TTGTCCTGCT CCTTGTAACG GTGCTTGTGT TTTAGGTATC
ATCGAAGACC CAGTCAACAT TAAGTCTGTT GAGTGTGCCA TTATCGATCA CGGTTTCGAA
CAGGGCTGGA TCAAGCCTCA ACCACCTACT CACAGGACAG GCAAGACGGT AGCTGTCATT
GGTTCTGGTC CCTCTGGTTT GGCTGCTGCA GACCAATTGA ACAAGGCTGG CCACAAGGTC
ACTGTCTACG AAAGAAGTGA CAGACCGGGC GGTTTGTTGA TGTACGGTAT TCCTAATATG
AAGTTAGACA AAAAGATTGT TAAGAGAAGG ACAGACTTAC TCGCTGCTGA AGGTATTGAG
TTTGTTTGCA ACACCACCGT TGGTGAAGAC ATCACTGTCG AAGAGTTGAA AGCCTCTAAT
GACGCTGTTG TTTTCGCTGT GGGCTCCACA ATTCCAAGAG ACTTGAAGAT TCCAGGTCGT
GAATTGAACA ATATCAATTT TGCCATGCAA TTGTTGCACT CTAACACAAA GGCTTTATTG
GACGATCAGT TGGAAGACAT CAGAAAGAAC TTGGAAGGTA AGCATGTTGT TGTCATTGGT
GGTGGTGATA CTGGTAACGA TTGTTTGGGT ACTTCCACCA GACACGGTGC CAAGTCTGTG
ACCAACTTTG AATTGTTGCC ACACCCACCT GCCACCAGAC CAAAGGACAA TCCTTGGCCA
CAATGGCCAA GAATCTTCAG AGTCGACTAC GGTCACACTG AAGTTGCCGC TCACTACGGC
AAGGACCCAA GAGAATATTC GATCTTGTCA AAGGAATTCG TTGACGATGG CGAAGGTAAT
GTCAAGGGTA TCAAGACCGT GAGAGTTGAA TGGAAGAGAA CCGACTCTGG AGCTTGGCAG
ATGGCAGAAG TTCCAGGCAG TGAAGAGTTC TTCCCTGCTG ATGTTGTTCT CTTGTCGATG
GGTTTTGTTG GTCCAGATGC AGACAACTTG GAAGTTTCCA AGACCAAGAG AGGAACGATC
ACCACTGTTG ACCCTAACGT GTACAGAGTC AGCGAGGACG ACAACCTCTT TGCCGCCGGT
GACTGTAGAA GAGGTCAATC TTTGGTTGTC TGGGGTATTC AAGAAGGTAG ACAATGTGCT
AGAGAAGTCG ACAACTTCTT AATGGGCGCC ACCAGATTGC CAGGTAACGG TTCAATTGAG
CAGAGAAACT ACAAATTGTT AGAGGAGTTA GCTGAAAAGG TTTAA
 
Protein sequence
MSSYLPQEEF QTNIYQYDET PENTSWASAL PVAKGLYNPE YEKDACGVGF TCHLKGEASH 
KIISDCRNLL CNMTHRGGEL NPKDGDGAGL LSSIPHKFLK REFKYHCNID LPPLGQYGTG
NIFFKKDDAV FEKSKSTFES IADSLGLKVL GWRKVPHDSS ILGPASLSRE PYILQPTVVL
SELAGQNDIA DDVFVSKYQK DFEKKLYILR KQSSHSIGLH NWFYICSLSN KTIVYKGQLA
PNQVYAYYHD LVNADYECHF ALVHSRFSTN TFPSWDRAQP LRLAAHNGEI NTLRGNKNWM
RAKEGVMSSK LFGEEIDKLF PIIEEGGSDS AAFDNVLELL TVNGVLSLPE AVMLMIPEAW
QNDTHIDPKK KAFYEWAACL MEPWDGPALF TFADDRYCGA NLDRNGLRPC RYYVTDDDRI
ICASEVGVIE IEPEKILQKG RLQPGRMLLV DTKEGRIVDD RELKNNVASR FDFKSWVLGN
MISLGDLIEK LQAREIDLSD KVSDTSYSVQ SDPRLVAFGY SHEQASLVLA PMAEGNEALG
SMGNDNALAC ISEQPKLLYE YFRQLFAQVT NPPIDPIREE IVMSLECYVG PQGNLLEMKP
DQCNRLLLKS PVLSNSELNA IRNIETVYPK WSVTQIDITF DKPEGIQGYV NTIDRICQQA
SKAIADNKKI IILSDKATSA TRVPISALIA TGAVHHHLVR QKQRSKVALI IETAEAREVH
HACCLVGYGI DGINPYLAIE TLIRMREENL LKNEALTPEK IIHNYKDAID HGILKVMSKM
GISTLASYKG AQIFEALGID NSVIDRCFAG TASRIKGVTF EYIAQDAFSM HERGFPSRDT
IKPVGLPETG EYHWRDGGDA HVNEPAAIAS LQDAVKNKNE RAYEAYCKKE HEAIRNCTLR
GLLDFDVDAS TSVPIDQVEP WTEIVRRFFT GAMSYGSISM EAHSTLAVAM NRLGGKSNTG
EGGEDSARSI VSENGDTMRS AIKQIASGRF GVTSYYLADA DELQIKMAQG AKPGEGGELP
GHKVSAQIGK TRHSTPGVGL ISPPPHHDIY SIEDLKQLLY DLKCANPRAR TSVKLVSEVG
VGIVAAGVAK AGSENILVSG GDGGTGAAKL TSIKYAGLPW ELGLAESHQT LVLNDLRGRV
ILQTDGQIKT GRDIAIACLL GAEEWGFATT PLIAMGCIMM RKCQTNACPV GIATQDPELR
KKFEGTPEHV INFFYYLAND LRNIMAKLGY RTINEMVGRT ERLKVREDFR NTKNANIDLS
PILTPAHTIR PGVATYCVRK QDHRLHVRID NKLIDESELT LAKGLPVTID CDVVNTDRTL
GTTLSYRVSK TFGENGLPHD TIHVNAKGSA GQSFGAFLAA GITLELEGDA NDYIGKGLSG
GRIIVYPPKE SKFKAEDQII AGNTAFFGAT SGSAFIRGVA AERFAVRNSG ATIVTEGTGD
HGCEYMSGGR VVVLGGTGRN FAAGMCGGIA YVLDMAQDFN KRVNTHTVEL SQVTEPSEIA
FLRGLIEDHR HYTNSEVADR ILNDFNRILP RFVKVLPFDY KKVLEKEKQK AEEAKKNELN
TFFKSIKEDP EADVTNGEAA KIKKGHVHIT SKAKDGHKEP KVLDVEDTIL DTEVEKKAPV
KLDKLKGFMK YKRRNEKYRD AKARAKDWNE MTSRLSKDEL KHETARCMDC GVPFCTSDTG
CPISNVIPKW NELVFQDRWY DALQRLLMTN NFPEFTGRIC PAPCNGACVL GIIEDPVNIK
SVECAIIDHG FEQGWIKPQP PTHRTGKTVA VIGSGPSGLA AADQLNKAGH KVTVYERSDR
PGGLLMYGIP NMKLDKKIVK RRTDLLAAEG IEFVCNTTVG EDITVEELKA SNDAVVFAVG
STIPRDLKIP GRELNNINFA MQLLHSNTKA LLDDQLEDIR KNLEGKHVVV IGGGDTGNDC
LGTSTRHGAK SVTNFELLPH PPATRPKDNP WPQWPRIFRV DYGHTEVAAH YGKDPREYSI
LSKEFVDDGE GNVKGIKTVR VEWKRTDSGA WQMAEVPGSE EFFPADVVLL SMGFVGPDAD
NLEVSKTKRG TITTVDPNVY RVSEDDNLFA AGDCRRGQSL VVWGIQEGRQ CAREVDNFLM
GATRLPGNGS IEQRNYKLLE ELAEKV