| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_82371 |
|---|
| Symbol | |
|---|
| ID | 4837231 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | + |
|---|
| Start bp | 1645080 |
|---|
| End bp | 1648439 |
|---|
| Gene Length | 3360 bp |
|---|
| Protein Length | 835 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640388546 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001382546 |
|---|
| Protein GI | 150863909 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0515] Serine/threonine protein kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.136498 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.168714 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | CTTCAAAGTG CTCTATATAT TTGTCACCAT ATTTGTACGT GTAGGCATTC ATATCTTGCC
ATCTTAACTA TTACTGTAGC CATATATATA GCCCAATAGC TCGACTTGTT CCTGTCTGTC
GTTTCAGATC TAAAGGAGCT ATCAGGGTCG CAAGGTTTTA GCTCTAATTC CCTTTCACAG
CGTGTTGTTT ACATTGTGTG TGAAATCATT TTGCACAGTC CAGACGTTTC GGGTTTTCTT
TTCGTGTACA GAAATAGCAA CACCTCATTT CGAAACCTGA AGAAAAAAAA CCGGCTACTT
ATCCATTCTC ATCTGCTTGA CGATTCTGTT ATCATCGAAG GTTTTCTTTC TCGGCCTAGG
AAGACAATTG GTTTTGTTGC GATAGTTGTG TCCGCAAAAT CCTCCGGTTC GTACTGTGTC
ACTCTTAGTC GCTTTTGTCA CCTGGCTCGT ATTCTTTCAC AGATAGAATC GCGGTGTTTT
TGATTTACTG TGATCTTTGC ACATCCCGTT TTCCACTTCT TCGCTTGTTT GTTGTGTTTT
CCATTAGACT CAACTCCACT CCAAGCGTAT CCAGTCCTCG ACATCTCGTC CATCGTGCCC
TTGCTCGTTG ACATCATCCC AATTCTACAG CATTGTCCAA TCTCAATTCT CTACATACTC
ACTTAGTTGA TAATCCATTA TGACGAGCAT CTACACGTCT GACCTCAAAC ATCACAGAAG
AGCTCCGCCC CCGCCTCCTG GAACCGGATC AGGCATGAAC TCAGCTACGG GGTCGACTTC
CTCGTTGGCT CCTTCGACGT CGTCGTCGCA CAAGAACTCT ATTCAACTCA ACATCAACTC
CAACAAACGC CAGTCTGGCT GGGTCCACAT CAAAGACGAC GGTATCTTTA CGTCGTTCCG
CTGGAATAAA CGGTTTATGG TAATTAACGA AAAAACTCTC AACTTTTATA AAAACGAACC
AACTCCAGCA GACTCGCCAG ACTTGTCGTT CCCTTTGAAC CACATCAGCA TCATAAACCT
CAAGCCCAAT TACGGTTACA CCAAGACATC GCAATGTTTG GAAATCGTCC CCAAGAACAA
CGGCAAGGTC ATTCTCATAT CCATCAAGTA CAACAATGAC TATTTGGACT GGTTGGATGC
CTTCACCACC AAATGCCCCT TGGTGCAAAT CGGCCAGGCT AACTCGTCCA ATCCTATCTC
CGGCAATTCG GGGGTGTCCA ATCCCATCAA CTTCACACAT AGGGTCCATG TCGGTTTCGA
CCCTGCCAGT GGAAACTTCA CAGGCTTGCC AGATACCTGG AAGACGTTGT TGCAACACTC
TAAGATCACC AATGAAGACT GGAAGAAGGA CCCTGTTGCT GTGATCGAAG TGTTGGAGTT
CTACTCCGAC ATCAACGGTG GTTCGGCAGC TTCAACTCCA ATGAGCTCGC CTGCTATTGG
TTTGAACTAT AACGCTAGCG CTTTCAACCA GACGAAGAAT CTCCTGGAAT GGACTAAACC
TCCATCCAAG AATAACAGTA ATAGCAATAA TCACAACCAA TTGTCATCGT CTTCTTCGAC
TTCGAACTTT CAACCTTCAA GGGCGGCTCC AAAGCCACCA ATGCCGTACC ATTTAACCAG
CCAGAAGTCT TCGAATAGCA TTTCGCCATT GAGCAATTTG ATGACAAAGA CTAACCAGTC
TGCCCCATCT GAAACCACCG AAAAGAACAG TGATTTGGTG CCTATAAGAA GAGCTCCTCC
TCCACCTGGT GTGAATAAGC CTGCTCAAAC GGCTCCTGTG TTCAAGTCGA GTCAGTCTAC
TTCGGCTATA CCCACAAGTA ATAACTCTAA TATGCCTACT GGTTTAGGTA TTTCGACATC
TCCTGGTAGT AGTACTACGA TTCCAAAGCA GGTTCCTCCA TCCTTGCCAC CAAACTCTAA
GGTTCATCCA GATTTGACCA TCCAAACTGG AACCAATAAT TATATTAATG CTAATAGTAA
GTACCAGGGG CCATCGAGTG CTCCTGCTAG TGGACCTGGT TATATTAAGC CATTTGGTAT
CACGAATAAG TTACAGCAGC AACAGCAGAC AAAGTCTTCC ACTGAACCTC TTCAGGTAAG
TGACAAGGCG AACAAGAATG TCGAGTCGCC CATCAAGCCA CTTCAGCCAA AGAAGGACGT
TGCAGTTGCT GCAGCAGCTC TTGCAGCAAC TTCTGCTGCA AAGAAGACTG ATACCAAAAC
AAAGATGCCT ATGGGTCCTG CGCCTATTAA GACTGCTAAG CAACTCAAGA AAGAGAGAGA
AAAGTTGAAC GACATGCAGA TCATTGCAAA GTTGAAAACT GTGGTTAATA GCAAGGATCC
TACTCCTTTG TTCAAGATTA TCGAAAAGGC AGGTCAAGGG GCTTCGGGAG CTGTGTACTT
GGCAGAAATG GTTAAAGAAA ACAATAGGAA GGTTGCCATC AAGCAAATGG ATTTGAATAT
CCAACCACGT AAAGAGTTGA TTATCAACGA AATCTTGGTG ATGAAGGATT CTCAACATAA
GAATATCGTC AACTTCTTGG ACTCCTACTT GAGAGGAAAT TCAGACTTGT GGGTCATCAT
GGAATATATG GAGGGTGGTT CCTTGACTGA GATCATTGAG AACAATGAAT TCAAGTTAAG
TGAAAGACAA ATTGCAACTA TCTGTTTTGA AACTTTGAAG GGGTTGCAAC ATTTGCATAA
GAAGCATATT ATTCACAGGG ATATAAAATC AGACAATGTG CTATTGGACG CAAAGGGGAA
CGTCAAGATT ACAGATTTTG GTTTCTGTGC TAAATTGACA GACCAAAGAA ACAAGAGGGC
TACCATGGTA GGCACACCTT ACTGGATGGC ACCGGAGGTG GTTAAGCAAA AAGAATATGA
TGAAAAAGTG GACGTTTGGT CCTTGGGTAT TATGACAATA GAAATGATCG AGGGTGAACC
CCCATACTTG AACGAGGAAC CTCTTAAGGC TCTTTACTTG ATTGCCACAA ATGGTACTCC
AAAGCTAAAA AAGCCAGAAT TATTGTCAAA TTCAATTAAA AAGTTTTTGT CTATCTGTCT
TTGTGTTGAT GTTAGATACA GAGCAACTAC TAATGAACTA CTTGAGCACT CCTTCATTCA
ACATAAATCG GGGAAGATCG AAGAGTTGGC TCCATTGTTG GAATGGAAGA AAAATGTGCA
GAAGAGCGAC GCACACACAT CACTCACTCT TGAGGACGAA TAGTTTGCAT TATAGAAAAC
GATAAGAGCA GATGTTTTCT TTGCGTTTGT GTTCCGATAG ATGTTACTGA TTATCTTTAA
TTTTAACTAA TGTATTTATT TCTTCTGACA ACATTTCTTA AATAAAAGTG TTTCTATTCT
|
|---|
| Protein sequence | MTSIYTSDLK HHRRAPPPPP GTGSGMNSAT GSTSSLAPST SSSHKNSIQL NINSNKRQSG
WVHIKDDGIF TSFRWNKRFM VINEKTLNFY KNEPTPADSP DLSFPLNHIS IINLKPNYGY
TKTSQCLEIV PKNNGKVILI SIKYNNDYLD WLDAFTTKCP LVQIGQANSS NPISGNSGVS
NPINFTHRVH VGFDPASGNF TGLPDTWKTL LQHSKITNED WKKDPVAVIE VLEFYSDING
GSAASTPMSS PAIGLNYNAS AFNQTKNLSE WTKPPSKNNS NSNNHNQLSS SSSTSNFQPS
RAAPKPPMPY HLTSQKSSNS ISPLSNLMTK TNQSAPSETT EKNSDLVPIR RAPPPPGSSQ
STSAIPTSNN SNMPTGLGIS TSPGSSTTIP KQVPPSLPPN SKVHPDLTIQ TGTNNYINAN
SKYQGPSSAP ASGPGYIKPF GITNKLQQQQ QTKSSTEPLQ VSDKANKNVE SPIKPLQPKK
DVAVAAAALA ATSAAKKTDT KTKMPMGPAP IKTAKQLKKE REKLNDMQII AKLKTVVNSK
DPTPLFKIIE KAGQGASGAV YLAEMVKENN RKVAIKQMDL NIQPRKELII NEILVMKDSQ
HKNIVNFLDS YLRGNSDLWV IMEYMEGGSL TEIIENNEFK LSERQIATIC FETLKGLQHL
HKKHIIHRDI KSDNVLLDAK GNVKITDFGF CAKLTDQRNK RATMVGTPYW MAPEVVKQKE
YDEKVDVWSL GIMTIEMIEG EPPYLNEEPL KALYLIATNG TPKLKKPELL SNSIKKFLSI
CLCVDVRYRA TTNELLEHSF IQHKSGKIEE LAPLLEWKKN VQKSDAHTSL TLEDE
|
|---|
| |