| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_81859 |
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| Symbol | DNL1 |
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| ID | 4837413 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 514266 |
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| End bp | 517359 |
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| Gene Length | 3094 bp |
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| Protein Length | 939 aa |
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| Translation table | 12 |
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| GC content | 41% |
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| IMG OID | 640388728 |
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| Product | DNA ligase IV |
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| Protein accession | XP_001382860 |
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| Protein GI | 150864147 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | AACTAACGGA ATTATGTCAG CCACTCAGCC CACCAACTCT GGCTCTCACC TTGTGCACTG
CCGCTGTTAG CTCCACTTGC TCGCACTCTG AACCTCCCTA GTAGCCAAAC GCTGTTTCCT
GCACTGTCTG TCTTATCGTC CCAATAATAT TCTTATCTAA ATCGACTTCT TCCTTCCTTT
GCAGATTGTG CATTGCAATT GCGCAGTTTC AATTTCTCTA ATTCCCTTCT TTCTGGCCAT
GTCTTTCTTA GATAATGTCG AGCCTCCTAC CAATCTCCAG GAGCCGCAGT ACAAGTTTGT
GGTGGATGAA CTTTTCACCC AACTAGACGG TGCCAACAGG GCCAACTTGG GCCATTTCAG
AACCGTTTCC GATAAAAAGG TGTCAGTGAT CCAGACGTTT ATCAAGACCT TTCGGATTCA
CATCGGTGAC AACATATTCC CCACGGCCCG CTTGGTGTTC CCCGATAAGG ACCGACGTCT
CTACTACATC AGAGATGTAA CTCTAGCTAG ACTCATAGTC AAGATGTATT CCATACCTCC
GGAATCGGAG GACTACAAAG TGTTGTACCA TTGGAAGCAT GGTTTCCAGA AGGAGAAAAG
ATTCACAGTA GATTCAAATA ACTTGCGAGA TTTGCCGTTG CGGGCCTCGC GTATTATTGC
TAATCGTAGA GAATCTACAG TTGCTACCAA CGATCAGAAC CAGCCAATCA CAACACGCCA
TTCGTATACT GTAGCCGAAA TGAATTCCAA ATTGGACTCA TTGAATGATG CAAAGAAGTC
TCAAGAACAG ATAGCCATCT TAAAGCCTTT GCTAGACTCT CTCTCTATTC CCGAAATCAG
ATGGTTGCTT CATATAATTT TGAAAAAATC GATTCTAGTA CGATTTGAGA ACTACTTTCT
CAGTGTATGG CACCCAGATG CTCCAGCCTT GTTCAAAGTG TGTAACAATC TCCAGAAGAC
ATTCAACTAT CTCGTAAACC AAGAAACTAG GTTGAATAAG AATGATCTCA CTGTACACCC
GACACTCCCA TTCCGACCTC AGTTGTCATT TAAGTTGACA AAAAACTATG ACAAGTTGAT
CAAGGATATG TCGATGACAG TTCCCATGGA TGTGAACTTC CAGAAGATGT TCGCGGCTAA
AGATCTTGCT GGAAAGTTCT ACATGGAAGA AAAGATGGAT GGCGACAGAA TGGTTTTACA
CAAGCAAGGG AAGCACTTCA AATTTTATTC GAGAAGGTTG AAAGACTATT CCTTTCTTTA
TGGCGAGAAC CTTGAAATCG GCTCTCTTAC CAAGTATTTA TCCAATGCAT TCCCCAGTAA
AGTGGACTCG ATCATTTTGG ATGGAGAGAT GGTGGCATGG GATTTCAAGA GAAATGTAGT
GCTACCATTT GGGACTTTGA AATCTTCGGC TATTCAGGAG TCCGTCAGAC AGTATACGAC
TATCGATCAA TATGAACAGC AGTCTTCTTA TCCATTTTTC TTAGTGTTTG ATATTCTCCA
TATCAATGGT ACCAATTTGA CGAATCATCC GTTATTCTTC AGAAAGGATA TCCTCCAGAA
AATTATAAAC CCAATACCAC ATAGACTAGA GCTTCTTCCT TCGATAATTG GTTCAACTGC
AGAAGATGTA CAAAGAGCAA TGAGAGAAGT AGTTAGTTCC AGAAGTGAAG GCATTGTAGT
AAAGCATTTG CAGCTGAAGT ACTTCATTGG GGAAAGAAAC CCCCACTGGG TAAAGGTCAA
ACCAGAGTAT CTTGAGAAGT TTGGTGAGAA TCTTGATTTG ACAGTAATAG GCAAAGTTCC
TGGTGTGAAA ATCTCGTATA TGTGTGGCTT GAAAAATGAT GATGACCAGG TCTTCTACAG
CTTCTGCACT GTTGCCAATG GGTTTACAGA AGACGAGTAT GATAAAATAG AAAGAATAAC
CCATAACAAA TGGATAGCTT ACAAGGATCA ATTGCCTCCC TCAAAGGTGC TTAACTTTGG
AGTAAAGAAA CCAATGCACT GGATCCACCC TCGGGATTCA GTTGTATTAG AGATAAAGGC
TAGGTCTATT GATTGTACCG TTGAGAAAAC TTATGCGGTG GGAACTACAT TGCACAATCT
CTACTGTCGT AGCATACGAG AAGACAAATC AATTCACGAT TGTACCACTA TTAGTGAGTA
TAAGCAAATC AAAGCTAAGT ATTCTAAGGA TTTGGAGAAA TCTCACTCTG CCAACAAGAA
GCGAAGAGTG TTACAGGATT CTTTTGTGCA AGAGCAACAA CCAAAACGGG TCAAAGTAGA
GTCTGATCTA TTCAGCGGCT TTGATTTCGT TATTCTCAGT GACAACTTAA GTCGCAATGG
AGATAGAATC ACAAGAGAAG AATTGATTAT ATTGGTAAAG AAATACGGCG GGAATATTAC
CAATACGGTT CACAAATTAG GGACCAGGCA GACTATTGTA GTTACCGAGA GAGAATTGCC
TACATGTAAA AGCTACTTTG ATAAGGGTAT CGACTTAGTC AGACCCAGTT GGCTCTTTGA
GTGTATCAAC AGAGTGGCCA TTGTACCCCT TGAGCCTTAC TTTATCTTTG GATCCAAGAA
TATGGCTGTG TTCAAGAACA GGCAAGATGA ATTTGGAGAC AGCTATGTTA TTCACCAAAC
GGTAGAGTCG TGGGATCGAA ATAGATTCCA ACGTCTTCCC GAGACGGAAG TTGACATCTA
TCGTAGAGAA TTTCTCGAGG ATGTTCTGGC TACAGAAGAG TCGTTTCCTC GTCGCTTTCT
ATTTCACGAT ATCAAATTTC ATATAGTGTC AGTGCAGAGT ACGGAAAACT ATATGGTAGA
ATTATTGCAG GATAGAATAG AGAGGTTTGG AGGGGAAGTA ATCGCTGCAC ATGCGGGGTG
TTCGTTTATT GTTGTGTGTG GTGATTCAGA GAACAGGGAT AGAACTGAGG TTTTGAACAA
GGTTAAGGCC ATCACTAAGG ATATCAGTGA AAAATTACAA TTTGAAGATG CTATTTTAAC
CACAAAGATC CCTAGTGTTG TCACTGAAGC TTTTGTAAAG CATTGTATCA AGAGAAATGT
ACTTCTTGAT TCAGACGACT ACAAGTACAT TTGA
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| Protein sequence | MSFLDNVEPP TNLQEPQYKF VVDELFTQLD GANRANLGHF RTVSDKKVSV IQTFIKTFRI
HIGDNIFPTA RLVFPDKDRR LYYIRDVTLA RLIVKMYSIP PESEDYKVLY HWKHGFQKEK
RFTVDSNNLR DLPLRASRII ANRRESTPIT TRHSYTVAEM NSKLDSLNDA KKSQEQIAIL
KPLLDSLSIP EIRWLLHIIL KKSILVRFEN YFLSVWHPDA PALFKVCNNL QKTFNYLVNQ
ETRLNKNDLT VHPTLPFRPQ LSFKLTKNYD KLIKDMSMTV PMDVNFQKMF AAKDLAGKFY
MEEKMDGDRM VLHKQGKHFK FYSRRLKDYS FLYGENLEIG SLTKYLSNAF PSKVDSIILD
GEMVAWDFKR NVVLPFGTLK SSAIQESVRQ YTTIDQYEQQ SSYPFFLVFD ILHINGTNLT
NHPLFFRKDI LQKIINPIPH RLELLPSIIG STAEDVQRAM REVVSSRSEG IVVKHLQSKY
FIGERNPHWV KVKPEYLEKF GENLDLTVIG KVPGVKISYM CGLKNDDDQV FYSFCTVANG
FTEDEYDKIE RITHNKWIAY KDQLPPSKVL NFGVKKPMHW IHPRDSVVLE IKARSIDCTV
EKTYAVGTTL HNLYCRSIRE DKSIHDCTTI SEYKQIKAKY SKDLEKSHSA NKKRRVLQDS
FVQEQQPKRV KVESDLFSGF DFVILSDNLS RNGDRITREE LIILVKKYGG NITNTVHKLG
TRQTIVVTER ELPTCKSYFD KGIDLVRPSW LFECINRVAI VPLEPYFIFG SKNMAVFKNR
QDEFGDSYVI HQTVESWDRN RFQRLPETEV DIYRREFLED VSATEESFPR RFLFHDIKFH
IVTENYMVEL LQDRIERFGG EVIAAHAGCS FIVVCGDSEN RDRTEVLNKV KAITKDISEK
LQFEDAILTT KIPSVVTEAF VKHCIKRNVL LDSDDYKYI
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